Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2199

Experiment: YNB Oleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10566 and 10567 are separated by 591 nucleotides10567 and 10568 are separated by 243 nucleotides mRNA_2198: 10566 - Hypothetical Protein, at 330,686 to 331,336 10566 mRNA_2199: 10567 - K05724 FGD5_6 FYVE, RhoGEF and PH domain containing 5/6, at 331,928 to 335,323 10567 mRNA_2200: 10568 - K11423 SETD2, SET2 histone-lysine N-methyltransferase SETD2, at 335,567 to 339,379 10568

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
remove
331,495 + +1.4
331,812 - -0.7
332,053 - -1.0
332,206 + +1.5
332,244 + +0.1
332,448 - 10567 mRNA_2199 0.15 -0.4
332,467 - 10567 mRNA_2199 0.16 -1.0
332,612 + 10567 mRNA_2199 0.20 -0.4
332,616 - 10567 mRNA_2199 0.20 -0.9
332,776 - 10567 mRNA_2199 0.25 -0.8
332,795 - 10567 mRNA_2199 0.26 -1.1
332,802 + 10567 mRNA_2199 0.26 -2.3
332,811 - 10567 mRNA_2199 0.26 -0.1
332,881 - 10567 mRNA_2199 0.28 -1.4
332,887 - 10567 mRNA_2199 0.28 +0.4
332,918 - 10567 mRNA_2199 0.29 +0.4
332,965 + 10567 mRNA_2199 0.31 +0.5
333,012 - 10567 mRNA_2199 0.32 -0.2
333,070 - 10567 mRNA_2199 0.34 +0.1
333,099 - 10567 mRNA_2199 0.34 +0.2
333,111 + 10567 mRNA_2199 0.35 -0.9
333,183 + 10567 mRNA_2199 0.37 -0.1
333,213 - 10567 mRNA_2199 0.38 -0.6
333,225 - 10567 mRNA_2199 0.38 -0.6
333,259 + 10567 mRNA_2199 0.39 +0.4
333,295 - 10567 mRNA_2199 0.40 +0.6
333,370 + 10567 mRNA_2199 0.42 -1.3
333,378 + 10567 mRNA_2199 0.43 -0.4
333,530 - 10567 mRNA_2199 0.47 -1.4
333,556 - 10567 mRNA_2199 0.48 -2.0
333,654 - 10567 mRNA_2199 0.51 +1.3
333,671 + 10567 mRNA_2199 0.51 +0.3
333,774 + 10567 mRNA_2199 0.54 -4.4
333,816 - 10567 mRNA_2199 0.56 -1.1
333,980 - 10567 mRNA_2199 0.60 -1.6
334,154 + 10567 mRNA_2199 0.66 +1.3
334,248 - 10567 mRNA_2199 0.68 +0.1
334,498 + 10567 mRNA_2199 0.76 +0.1
334,501 - 10567 mRNA_2199 0.76 +0.6
334,540 + 10567 mRNA_2199 0.77 +0.4
334,646 - 10567 mRNA_2199 0.80 +0.7
334,780 - 10567 mRNA_2199 0.84 -0.3
334,787 + 10567 mRNA_2199 0.84 -1.0
334,873 - 10567 mRNA_2199 0.87 +0.2
335,229 - +0.0
335,254 + -0.8
335,746 + -1.0
336,171 - 10568 mRNA_2200 0.16 -0.2

Or see this region's nucleotide sequence