Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2252

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10619 and 10620 are separated by 262 nucleotides10620 and 10621 are separated by 264 nucleotides mRNA_2251: 10619 - KOG3313 Molecular chaperone Prefoldin, subunit 3, at 466,202 to 467,815 10619 mRNA_2252: 10620 - HMMPfam-Signal recognition particle 9 kDa protein (SRP9)-PF05486,SUPERFAMILY--SSF54762, at 468,078 to 468,584 10620 mRNA_2253: 10621 - HMMPfam-Staphylococcal nuclease homologue-PF00565,ProSiteProfiles-Thermonuclease domain profile.-PS50830,SMART-Staphylococcal nuclease homologues-SM00318,SUPERFAMILY--SSF50199, at 468,849 to 469,968 10621

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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467,334 - 10619 mRNA_2251 0.70 -1.9
467,748 + -1.4
467,759 + +0.3
467,802 + -0.6
467,916 - +0.7
468,036 - -0.7
468,206 - 10620 mRNA_2252 0.25 -0.2
468,629 + -0.3
468,794 + +0.2
468,913 - +0.2
468,959 + -0.6
469,067 + 10621 mRNA_2253 0.19 -0.1
469,363 - 10621 mRNA_2253 0.46 -0.7
469,372 + 10621 mRNA_2253 0.47 +1.8
469,498 + 10621 mRNA_2253 0.58 +0.2

Or see this region's nucleotide sequence