Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2288

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10656 and 10657 are separated by 212 nucleotides mRNA_2288: 10656 - BLAST CLP1-like protein [Schizophyllum commune H4-8], at 535,307 to 535,861 10656 mRNA_2289: 10657 - KOG2454 Betaine aldehyde dehydrogenase, at 536,074 to 538,335 10657

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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534,784 + -0.3
535,062 + -1.0
535,135 - -1.1
535,195 + +0.2
535,920 - -1.4
536,046 - +0.5
536,059 + +0.5
536,070 - -0.4
536,232 + -0.1
536,496 + 10657 mRNA_2289 0.19 -0.8
536,513 - 10657 mRNA_2289 0.19 -0.7
536,805 + 10657 mRNA_2289 0.32 -0.8

Or see this region's nucleotide sequence