Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2319

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10686 and 10687 are separated by 147 nucleotides mRNA_2318: 10686 - HMMPfam-Bromodomain associated-PF07524,HMMPfam-Transcription factor TFIID complex subunit 8 C-term-PF10406, at 594,468 to 595,983 10686 mRNA_2319: 10687 - KOG3872 FOG FHA domain, at 596,131 to 598,966 10687

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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596,067 - -0.1
596,084 - -0.1
596,100 - -0.1
596,234 + +0.9
596,241 + +0.7
596,242 + -0.1
596,365 - +1.0
596,389 + +1.4
596,533 + 10687 mRNA_2319 0.14 +0.6
596,538 - 10687 mRNA_2319 0.14 +0.3
596,681 + 10687 mRNA_2319 0.19 +0.0
596,997 + 10687 mRNA_2319 0.31 +0.8
597,131 - 10687 mRNA_2319 0.35 +1.4
597,308 - 10687 mRNA_2319 0.42 +1.0
598,702 - +0.9
598,726 + +1.8
598,877 + +1.1
599,148 - +0.7
599,154 - +0.4
599,154 + +0.1
599,178 - +0.1
599,316 - +0.5
599,317 + +0.9
599,321 - +0.2
599,463 - -0.1
599,868 - +0.2
599,890 + -1.5
599,902 - -0.2
599,905 + -0.6
599,909 + -0.3

Or see this region's nucleotide sequence