Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2339

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10706 and 10707 are separated by 165 nucleotides10707 and 10708 are separated by 418 nucleotides mRNA_2338: 10706 - K05545 DUS4 tRNA-dihydrouridine synthase 4, at 657,491 to 659,083 10706 mRNA_2339: 10707 - SUPERFAMILY--SSF55298, at 659,249 to 660,620 10707 mRNA_2340: 10708 - K06927 DPH6 diphthine-ammonia ligase, at 661,039 to 662,267 10708

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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659,217 - -0.2
659,711 + 10707 mRNA_2339 0.34 -3.1
660,141 - 10707 mRNA_2339 0.65 -0.1
661,127 + +1.2
661,539 + 10708 mRNA_2340 0.41 +0.5

Or see this region's nucleotide sequence