Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2359

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10725 and 10726 are separated by 0 nucleotides10726 and 10727 are separated by 213 nucleotides10727 and 10728 are separated by 836 nucleotides mRNA_2357: 10725 - BLAST Immunoglobulin-like domain contaning protein [Rho..., at 698,588 to 700,327 10725 mRNA_2358: 10726 - Hypothetical Protein, at 700,328 to 700,780 10726 mRNA_2359: 10727 - K02927 RP-L40e, RPL40 large subunit ribosomal protein L40e, at 700,994 to 701,674 10727 mRNA_2360: 10728 - Hypothetical Protein, at 702,511 to 702,996 10728

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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700,674 - 10726 mRNA_2358 0.76 -1.5
702,117 + +1.5
702,124 + -0.0
702,160 - +0.6
702,316 + -0.5
702,318 + -0.8
702,448 - +0.0
702,589 - 10728 mRNA_2360 0.16 +0.1
702,618 - 10728 mRNA_2360 0.22 -0.4

Or see this region's nucleotide sequence