Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2376

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10743 and 10744 are separated by 259 nucleotides10744 and 10745 are separated by 321 nucleotides mRNA_2375: 10743 - Hypothetical Protein, at 748,560 to 749,428 10743 mRNA_2376: 10744 - Hypothetical Protein, at 749,688 to 751,493 10744 mRNA_2377: 10745 - KOG0725 Reductases with broad range of substrate specificities, at 751,815 to 752,999 10745

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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748,800 - 10743 mRNA_2375 0.28 +1.1
748,810 - 10743 mRNA_2375 0.29 -0.0
748,816 - 10743 mRNA_2375 0.29 -0.2
748,967 - 10743 mRNA_2375 0.47 -0.7
748,981 + 10743 mRNA_2375 0.48 -0.1
749,409 + -0.0
749,538 - +1.1
749,705 + -1.1
750,001 - 10744 mRNA_2376 0.17 -0.5
750,109 + 10744 mRNA_2376 0.23 +0.2
750,166 + 10744 mRNA_2376 0.26 -0.0
750,272 + 10744 mRNA_2376 0.32 +0.5
750,594 - 10744 mRNA_2376 0.50 -0.0
750,727 + 10744 mRNA_2376 0.58 -1.3
750,868 - 10744 mRNA_2376 0.65 -0.3
750,881 - 10744 mRNA_2376 0.66 +0.3
751,009 - 10744 mRNA_2376 0.73 +0.2
751,011 - 10744 mRNA_2376 0.73 -0.3
751,445 - +0.1
751,457 - +0.2
751,461 - -0.7
751,472 - +0.8
751,593 + +0.2
751,596 - -0.3
751,733 + +0.2
751,751 - -1.1
751,754 - +0.2
751,758 - -0.4
751,768 + +2.3
751,770 - -1.2
752,083 - 10745 mRNA_2377 0.23 +0.5
752,350 + 10745 mRNA_2377 0.45 -1.1
752,479 + 10745 mRNA_2377 0.56 -1.3

Or see this region's nucleotide sequence