Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2443

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10810 and 10811 are separated by 538 nucleotides10811 and 10812 are separated by 351 nucleotides mRNA_2442: 10810 - HMMPfam-ACT domain-PF13840,SUPERFAMILY--SSF55021, at 140,857 to 142,808 10810 mRNA_2443: 10811 - HMMPfam-Peroxidase-PF00141,PRINTS-Haem peroxidase superfamily signature-PR00458,PRINTS-Plant ascorbate peroxidase signature-PR00459,ProSitePatterns-Peroxidases proximal heme-ligand signature.-PS00435,ProSitePatterns-Peroxidases active site signature.-PS00436,ProSiteProfiles-Plant heme peroxidase family profile.-PS50873,SUPERFAMILY--SSF48113, at 143,347 to 145,508 10811 mRNA_2444: 10812 - KOG4505 Na+/H+ antiporter, at 145,860 to 150,269 10812

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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142,425 - 10810 mRNA_2442 0.80 -1.4
142,500 + 10810 mRNA_2442 0.84 -0.3
142,504 - 10810 mRNA_2442 0.84 -0.3
142,670 - -0.8
142,680 + -1.5
142,802 - -0.7
142,810 - +0.5
142,819 + -0.1
142,825 + +0.0
142,832 + -0.8
142,847 + -0.1
142,926 + +0.9
143,001 - +0.2
143,140 - -0.3
143,140 + -1.1
143,140 - +0.3
143,140 - -1.0
143,144 - -1.0
143,146 + +0.6
143,147 + -0.1
143,150 + +1.0
143,151 - -0.7
143,164 - -0.6
143,167 + -0.4
143,266 + +0.3
143,279 + -0.1
143,284 - -0.9
143,294 + -0.2
143,299 - +0.2
143,302 + +0.7
143,413 - -1.1
143,440 + -0.5
143,578 + 10811 mRNA_2443 0.11 -2.0
143,578 + 10811 mRNA_2443 0.11 -1.5
143,597 - 10811 mRNA_2443 0.12 +0.6
143,755 - 10811 mRNA_2443 0.19 -2.3
143,762 + 10811 mRNA_2443 0.19 -0.9
143,902 - 10811 mRNA_2443 0.26 -2.0
144,161 - 10811 mRNA_2443 0.38 -1.2
144,322 - 10811 mRNA_2443 0.45 -2.1
144,326 - 10811 mRNA_2443 0.45 -0.6
144,622 - 10811 mRNA_2443 0.59 -1.5
145,043 - 10811 mRNA_2443 0.78 -1.0
145,046 + 10811 mRNA_2443 0.79 -1.1
145,602 - -2.3
145,618 - +0.3
145,621 - -0.6
145,623 + +0.2
145,625 - +0.5
145,625 + -0.3
145,637 - +0.2
145,639 - +0.4
145,643 - -2.2
145,652 + -0.3
145,658 - -0.2
145,669 - -1.7
145,671 - +0.6
145,678 + +0.0
145,704 + +0.8
145,792 + -0.0
145,800 - -1.6
145,821 + -0.4
145,949 + -0.5
146,110 + -0.6
146,252 - +0.6

Or see this region's nucleotide sequence