Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2482

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10850 and 10851 are separated by 146 nucleotides mRNA_2482: 10850 - KOG0712 Molecular chaperone (DnaJ superfamily), at 252,498 to 254,224 10850 mRNA_2483: 10851 - K17541 SCYL2 SCY1-like protein 2, at 254,371 to 257,459 10851

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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251,608 - +0.5
251,918 + +0.9
251,944 - +2.0
252,056 + -0.8
252,057 + +1.2
252,092 - -0.0
252,161 - +0.3
252,187 + +0.3
252,196 - -1.3
252,232 + +0.5
252,258 - +0.1
252,265 - -0.4
252,372 + -0.6
252,372 - -0.2
252,373 - -1.2
252,387 + +0.3
252,826 - 10850 mRNA_2482 0.19 -2.0
253,230 - 10850 mRNA_2482 0.42 +0.5
253,402 - 10850 mRNA_2482 0.52 -0.9
253,412 + 10850 mRNA_2482 0.53 -0.1
253,430 + 10850 mRNA_2482 0.54 +0.5
253,557 - 10850 mRNA_2482 0.61 +0.9
253,684 + 10850 mRNA_2482 0.69 -0.4
253,859 - 10850 mRNA_2482 0.79 +0.9
253,981 - 10850 mRNA_2482 0.86 -0.8
253,986 + 10850 mRNA_2482 0.86 +0.4
253,986 + 10850 mRNA_2482 0.86 -0.3
253,994 - 10850 mRNA_2482 0.87 -1.3
254,036 + 10850 mRNA_2482 0.89 -0.8
254,147 - +0.1
254,149 - -1.0
254,303 + -1.8
254,307 + -0.7
254,318 - +0.4
254,458 - +0.1
254,715 - 10851 mRNA_2483 0.11 +0.0
254,721 - 10851 mRNA_2483 0.11 -0.5
254,742 - 10851 mRNA_2483 0.12 +0.5
254,751 + 10851 mRNA_2483 0.12 -0.7
254,871 + 10851 mRNA_2483 0.16 -0.1
255,057 - 10851 mRNA_2483 0.22 -0.9
255,058 + 10851 mRNA_2483 0.22 -0.7

Or see this region's nucleotide sequence