Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2542

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10909 and 10910 are separated by 198 nucleotides10910 and 10911 are separated by 273 nucleotides mRNA_2541: 10909 - HMMPfam-Hemerythrin HHE cation binding domain-PF01814, at 400,071 to 401,322 10909 mRNA_2542: 10910 - Hypothetical Protein, at 401,521 to 403,165 10910 mRNA_2543: 10911 - Hypothetical Protein, at 403,439 to 404,457 10911

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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401,016 + 10909 mRNA_2541 0.75 -0.1
401,290 + -0.3
401,304 + -0.1
401,423 - -0.8
401,442 - +0.7
401,444 + +0.3
401,460 + -1.5
401,469 + +0.0
401,590 + -0.4
401,639 - -2.2
402,076 + 10910 mRNA_2542 0.34 +0.1
402,358 - 10910 mRNA_2542 0.51 -0.7
402,379 + 10910 mRNA_2542 0.52 -0.7
402,792 - 10910 mRNA_2542 0.77 +0.2
402,813 - 10910 mRNA_2542 0.79 -0.6
402,827 + 10910 mRNA_2542 0.79 -0.6
402,941 + 10910 mRNA_2542 0.86 -1.3
403,062 - +0.7
403,063 + -0.6
403,069 + +0.9
403,374 + -1.6
403,396 + +0.4
403,419 + -0.2
403,633 + 10911 mRNA_2543 0.19 -0.7
403,640 + 10911 mRNA_2543 0.20 -0.4
404,000 - 10911 mRNA_2543 0.55 -0.6

Or see this region's nucleotide sequence