Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2556

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10923 and 10924 are separated by 276 nucleotides10924 and 10925 are separated by 289 nucleotides mRNA_2555: 10923 - K12736 PPWD1 peptidylprolyl isomerase domain and WD repeat-containing protein 1, at 432,774 to 435,316 10923 mRNA_2556: 10924 - Hypothetical Protein, at 435,593 to 437,275 10924 mRNA_2557: 10925 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 437,565 to 439,347 10925

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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435,486 + +0.2
435,615 + -1.7
435,647 + +1.6
435,753 + +0.1
435,753 + -0.5
435,755 + -0.2
435,756 + -0.1
435,761 - -1.7
435,851 - 10924 mRNA_2556 0.15 -0.0
435,879 + 10924 mRNA_2556 0.17 -0.6
435,909 - 10924 mRNA_2556 0.19 +0.1
435,918 + 10924 mRNA_2556 0.19 +0.1
436,016 + 10924 mRNA_2556 0.25 -1.2
436,042 + 10924 mRNA_2556 0.27 -0.3
436,350 - 10924 mRNA_2556 0.45 +0.1
436,363 - 10924 mRNA_2556 0.46 +0.1
436,519 - 10924 mRNA_2556 0.55 -1.8
436,575 - 10924 mRNA_2556 0.58 +0.3
436,757 - 10924 mRNA_2556 0.69 -0.1
437,054 - 10924 mRNA_2556 0.87 -0.5
437,175 + +0.8
437,449 + +0.2
437,521 + +0.7
438,247 - 10925 mRNA_2557 0.38 -0.6
438,247 - 10925 mRNA_2557 0.38 -0.1
438,253 + 10925 mRNA_2557 0.39 -0.5
438,253 + 10925 mRNA_2557 0.39 -0.6
438,253 - 10925 mRNA_2557 0.39 -0.4

Or see this region's nucleotide sequence