Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2603

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10970 and 10971 are separated by 469 nucleotides10971 and 10972 are separated by 29 nucleotides mRNA_2602: 10970 - HMMPfam-Glycosyltransferase family 10 (fucosyltransferase)-PF00852,SUPERFAMILY--SSF53756, at 572,350 to 572,862 10970 mRNA_2603: 10971 - Hypothetical Protein, at 573,332 to 575,202 10971 mRNA_2604: 10972 - BLAST Esterase, SGNH hydrolase-type domain protein [Rho..., at 575,232 to 576,935 10972

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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572,503 + 10970 mRNA_2602 0.30 -0.1
572,505 + 10970 mRNA_2602 0.30 +0.1
572,552 + 10970 mRNA_2602 0.39 +0.7
572,573 + 10970 mRNA_2602 0.43 -1.4
572,746 - 10970 mRNA_2602 0.77 +0.3
572,759 + 10970 mRNA_2602 0.80 -0.4
572,841 - -0.4
573,081 - +0.2
573,107 + -0.1
573,236 + -0.4
573,249 - -0.4
573,264 - +0.1
573,265 + -0.2
573,285 - -0.3
573,447 - -1.9
573,539 - 10971 mRNA_2603 0.11 -0.0
573,717 + 10971 mRNA_2603 0.21 -0.3
573,724 - 10971 mRNA_2603 0.21 +1.2
573,739 + 10971 mRNA_2603 0.22 +0.4
573,740 - 10971 mRNA_2603 0.22 +0.2
573,870 - 10971 mRNA_2603 0.29 -0.2
573,885 + 10971 mRNA_2603 0.30 -0.2
573,919 - 10971 mRNA_2603 0.31 +0.0
574,011 - 10971 mRNA_2603 0.36 -0.3
574,042 + 10971 mRNA_2603 0.38 +1.5
574,146 - 10971 mRNA_2603 0.44 -0.8
574,289 + 10971 mRNA_2603 0.51 +0.5
574,457 - 10971 mRNA_2603 0.60 -0.8
574,615 - 10971 mRNA_2603 0.69 +0.1
574,630 - 10971 mRNA_2603 0.69 -1.2
574,960 + 10971 mRNA_2603 0.87 -0.1
575,099 + -0.5
575,269 + -0.1
575,325 - +0.1
575,337 + +0.2
575,673 + 10972 mRNA_2604 0.26 +0.2
575,797 - 10972 mRNA_2604 0.33 -0.7
575,817 - 10972 mRNA_2604 0.34 +0.3
575,817 + 10972 mRNA_2604 0.34 -1.0
575,825 + 10972 mRNA_2604 0.35 +0.6
575,947 - 10972 mRNA_2604 0.42 +0.3
575,973 - 10972 mRNA_2604 0.43 -0.5
575,980 + 10972 mRNA_2604 0.44 -0.1
576,119 - 10972 mRNA_2604 0.52 -0.1

Or see this region's nucleotide sequence