Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2638

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11005 and 11006 are separated by 276 nucleotides11006 and 11007 are separated by 839 nucleotides mRNA_2637: 11005 - HMMPfam-Sulphur transport-PF04143,HMMPfam-Domain of unknown function (DUF4341)-PF14241, at 649,432 to 650,669 11005 mRNA_2638: 11006 - SMART-heat shock factor-SM00415, at 650,946 to 653,673 11006 mRNA_2639: 11007 - HMMPfam-Glycosyl hydrolase family 26-PF02156,SUPERFAMILY--SSF51445, at 654,513 to 656,042 11007

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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649,951 - 11005 mRNA_2637 0.42 +0.2
650,041 - 11005 mRNA_2637 0.49 +0.3
650,060 - 11005 mRNA_2637 0.51 -0.4
650,181 - 11005 mRNA_2637 0.61 -0.4
650,228 - 11005 mRNA_2637 0.64 +1.0
650,301 + 11005 mRNA_2637 0.70 +1.2
650,561 - +0.4
650,687 + +0.1
650,963 + +1.0
651,109 - -0.5
651,109 + +0.6
651,243 - 11006 mRNA_2638 0.11 -1.2
651,295 - 11006 mRNA_2638 0.13 -0.6
651,403 - 11006 mRNA_2638 0.17 -0.8
651,403 - 11006 mRNA_2638 0.17 +1.7
651,967 - 11006 mRNA_2638 0.37 -0.2
651,984 + 11006 mRNA_2638 0.38 -0.6
652,271 - 11006 mRNA_2638 0.49 -0.2
652,714 - 11006 mRNA_2638 0.65 -0.4
652,741 + 11006 mRNA_2638 0.66 -0.0
653,277 + 11006 mRNA_2638 0.85 +0.2
653,435 - -0.2
653,580 + +0.2
653,757 - +0.2
653,899 - -0.7
653,900 + -2.7
653,904 - -2.2
654,036 + -0.9
654,325 - -0.3
654,327 - +0.2
654,330 - +0.9
654,346 + +0.0
654,353 - -0.3
654,379 + +0.0
654,385 - +0.1
654,387 + -3.0
654,389 + +0.1
654,390 + -0.8
654,392 + +0.9
654,393 - +0.7
654,393 - -0.4
654,393 + +1.0
654,394 - -0.9
654,395 - +0.3
654,396 + -0.3
654,397 + +0.4
654,398 + +0.5
654,413 - -0.2
654,414 + +0.5
654,419 + +1.0
654,427 + +0.2
654,429 - -0.6

Or see this region's nucleotide sequence