Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2645

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11012 and 11013 are separated by 325 nucleotides11013 and 11014 are separated by 280 nucleotides mRNA_2644: 11012 - SUPERFAMILY--SSF52058, at 664,432 to 665,418 11012 mRNA_2645: 11013 - Hypothetical Protein, at 665,744 to 666,738 11013 mRNA_2646: 11014 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52058, at 667,019 to 668,057 11014

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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665,337 - +0.2
665,575 - -0.3
665,655 + -1.1
665,794 - -0.1
665,794 - -0.5
665,888 + 11013 mRNA_2645 0.14 -0.4
665,934 + 11013 mRNA_2645 0.19 -1.7
666,100 - 11013 mRNA_2645 0.36 +0.9
666,102 + 11013 mRNA_2645 0.36 -0.2
666,207 + 11013 mRNA_2645 0.47 -0.1
666,375 + 11013 mRNA_2645 0.63 -0.6
666,517 + 11013 mRNA_2645 0.78 -0.7
666,639 + -0.0
666,662 + +0.3
666,917 + -1.3
667,380 + 11014 mRNA_2646 0.35 -0.8
667,604 + 11014 mRNA_2646 0.56 -0.6
667,673 - 11014 mRNA_2646 0.63 +1.1

Or see this region's nucleotide sequence