Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2649

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2649: 11017 - K08157 TPO1 MFS transporter, DHA1 family, multidrug resistance protein, at 672,957 to 675,080 11017

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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672,228 - +1.3
672,230 + -0.7
672,232 - -0.0
672,233 - +0.1
672,235 - -0.8
672,245 + -0.5
672,246 + +1.2
672,364 - +0.3
672,706 - +1.6
672,787 + -0.8
673,263 + 11017 mRNA_2649 0.14 -0.1
673,379 + 11017 mRNA_2649 0.20 +1.3
673,402 - 11017 mRNA_2649 0.21 -0.7
673,685 + 11017 mRNA_2649 0.34 -0.9
673,698 + 11017 mRNA_2649 0.35 +0.2
673,744 + 11017 mRNA_2649 0.37 -1.4
673,840 - 11017 mRNA_2649 0.42 -1.0
673,898 + 11017 mRNA_2649 0.44 -0.0
673,952 - 11017 mRNA_2649 0.47 +0.4
674,144 - 11017 mRNA_2649 0.56 -1.5
674,173 + 11017 mRNA_2649 0.57 +0.9
674,210 - 11017 mRNA_2649 0.59 +0.9
674,315 - 11017 mRNA_2649 0.64 -1.7
674,438 - 11017 mRNA_2649 0.70 +0.9
674,462 + 11017 mRNA_2649 0.71 +2.0
674,582 + 11017 mRNA_2649 0.77 -1.4
674,593 - 11017 mRNA_2649 0.77 +0.2
675,011 - -0.1
675,020 - -0.6
675,145 - -0.6
675,445 - -0.6
675,479 - +0.1
675,483 + -0.8
675,487 + -0.0
675,511 - -1.4
675,596 - -0.4
675,605 + -0.4
675,608 + -0.8
675,615 - +0.1
675,618 - +0.1
675,629 - -0.8
675,630 - -1.7
675,630 + +0.8
675,640 + -1.1
675,642 - +0.2
675,649 - -0.7
675,652 - +0.2
675,652 - -0.6
675,654 + -1.8
675,654 + +1.2
675,655 - -1.2
675,659 + -0.0
675,659 + +0.8
675,659 + -0.0
675,659 + +0.3
675,695 - +0.1
675,695 - +0.1
675,709 + -0.2
675,744 - +0.2
675,967 + -0.6
675,970 + +0.0
675,987 + +0.1
675,990 - +0.6

Or see this region's nucleotide sequence