Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2772

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11139 and 11140 are separated by 190 nucleotides11140 and 11141 are separated by 521 nucleotides mRNA_2771: 11139 - KOG4072 Signal peptidase complex, subunit SPC25, at 175,827 to 177,001 11139 mRNA_2772: 11140 - SUPERFAMILY--SSF56112, at 177,192 to 178,295 11140 mRNA_2773: 11141 - K02953 RP-S13e, RPS13 small subunit ribosomal protein S13e, at 178,817 to 179,625 11141

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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176,203 - 11139 mRNA_2771 0.32 -2.8
176,204 - 11139 mRNA_2771 0.32 +1.7
176,771 - 11139 mRNA_2771 0.80 +1.5
177,068 + +0.4
177,259 - -0.3
177,515 - 11140 mRNA_2772 0.29 +0.6
177,566 - 11140 mRNA_2772 0.34 -1.0
177,662 - 11140 mRNA_2772 0.43 +0.0
177,827 + 11140 mRNA_2772 0.58 +1.0
177,832 - 11140 mRNA_2772 0.58 -0.6
177,869 - 11140 mRNA_2772 0.61 -0.9
177,974 + 11140 mRNA_2772 0.71 +0.4
178,242 + -2.5
178,296 + -1.6
178,417 - -1.7
178,586 - -3.8

Or see this region's nucleotide sequence