Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2790

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11156 and 11157 are separated by 66 nucleotides11157 and 11158 are separated by 195 nucleotides11158 and 11159 are separated by 161 nucleotides mRNA_2788: 11156 - HMMPfam-Protein of unknown function (DUF1183)-PF06682, at 218,324 to 218,690 11156 mRNA_2789: 11157 - Interpro SOCE-associated regulatory factor of calcium homoeostasis, at 218,757 to 219,433 11157 mRNA_2790: 11158 - Hypothetical Protein, at 219,629 to 222,406 11158 mRNA_2791: 11159 - K05544 DUS3 tRNA-dihydrouridine synthase 3, at 222,568 to 225,746 11159

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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218,723 - -0.6
219,127 - 11157 mRNA_2789 0.55 +0.7
219,528 - +1.2
219,830 - +0.4
219,988 - 11158 mRNA_2790 0.13 -0.4
220,046 - 11158 mRNA_2790 0.15 -0.6
220,410 + 11158 mRNA_2790 0.28 -0.2
220,755 - 11158 mRNA_2790 0.41 +0.0
221,463 + 11158 mRNA_2790 0.66 +0.4
221,661 + 11158 mRNA_2790 0.73 -0.6
221,753 - 11158 mRNA_2790 0.76 -0.4
221,835 + 11158 mRNA_2790 0.79 +0.2
221,875 + 11158 mRNA_2790 0.81 -0.6
222,068 + 11158 mRNA_2790 0.88 -0.4
222,508 - -0.1
222,521 + -0.5
222,792 + +0.2
223,077 + 11159 mRNA_2791 0.16 +0.1
223,258 - 11159 mRNA_2791 0.22 -0.8
223,376 + 11159 mRNA_2791 0.25 -0.9
223,376 + 11159 mRNA_2791 0.25 -0.8

Or see this region's nucleotide sequence