Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2832

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11199 and 11200 are separated by 403 nucleotides11200 and 11201 are separated by 629 nucleotides mRNA_2831: 11199 - HMMPfam-short chain dehydrogenase-PF00106,PRINTS-Glucose/ribitol dehydrogenase family signature-PR00081,SMART--SM00822,SUPERFAMILY--SSF51735, at 318,054 to 319,183 11199 mRNA_2832: 11200 - KOG1611 Predicted short chain-type dehydrogenase, at 319,587 to 320,810 11200 mRNA_2833: 11201 - KOG0254 Predicted transporter (major facilitator superfamily), at 321,440 to 324,159 11201

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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318,672 + 11199 mRNA_2831 0.55 -0.4
318,879 - 11199 mRNA_2831 0.73 +0.2
319,034 - 11199 mRNA_2831 0.87 +0.1
319,255 - +0.2
319,302 + +0.1
319,520 - +0.0
319,660 - -0.2
319,846 - 11200 mRNA_2832 0.21 -0.3
320,178 - 11200 mRNA_2832 0.48 -0.6
320,297 + 11200 mRNA_2832 0.58 +0.7
320,329 - 11200 mRNA_2832 0.61 +0.1
320,338 - 11200 mRNA_2832 0.61 -0.3
320,705 - -0.8
320,714 + +0.6
320,719 - -0.1
320,723 - -1.3
320,781 + -0.8
320,785 - -0.2
320,815 + +1.0
320,857 + -1.5
320,863 + -1.9
320,870 - +1.2
320,974 - -1.2
321,094 + +0.7
321,573 - +0.0
321,592 + +0.3
321,749 + 11201 mRNA_2833 0.11 -0.3

Or see this region's nucleotide sequence