Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2834

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11201 and 11202 are separated by 300 nucleotides11202 and 11203 are separated by 158 nucleotides mRNA_2833: 11201 - KOG0254 Predicted transporter (major facilitator superfamily), at 321,440 to 324,159 11201 mRNA_2834: 11202 - K01001 ALG7 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, at 324,460 to 326,344 11202 mRNA_2835: 11203 - K00022 HADH 3-hydroxyacyl-CoA dehydrogenase, at 326,503 to 328,205 11203

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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323,783 - 11201 mRNA_2833 0.86 +2.1
323,916 - -0.0
323,922 - +0.6
323,926 - +0.3
324,045 - -0.6
324,155 - -0.0
324,179 - +0.1
324,186 - +0.7
324,208 - -1.4
324,209 + -0.4
324,227 + -1.1
324,379 + +1.0
324,427 + +0.5
326,085 + 11202 mRNA_2834 0.86 -1.1
326,399 + -0.1
326,449 - -0.7
326,453 - +0.2
326,465 + +0.7
326,466 + -0.1
326,597 + -1.4
326,615 + -3.5
326,616 - +0.2
326,753 + 11203 mRNA_2835 0.15 -0.5
326,789 + 11203 mRNA_2835 0.17 -1.3
326,841 + 11203 mRNA_2835 0.20 -2.6
326,907 + 11203 mRNA_2835 0.24 -1.1
327,192 + 11203 mRNA_2835 0.40 -1.6
327,335 - 11203 mRNA_2835 0.49 -0.5

Or see this region's nucleotide sequence