Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2847

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11214 and 11215 are separated by 192 nucleotides11215 and 11216 are separated by 950 nucleotides mRNA_2846: 11214 - KOG3100 Uncharacterized conserved protein, at 349,966 to 351,384 11214 mRNA_2847: 11215 - ProSitePatterns-Zinc finger RING-type signature.-PS00518, at 351,577 to 353,493 11215 mRNA_2848: 11216 - HMMPfam-GMC oxidoreductase-PF00732,HMMPfam-GMC oxidoreductase-PF05199,PIRSF--PIRSF000137,ProSitePatterns-GMC oxidoreductases signature 2.-PS00624,SUPERFAMILY--SSF51905,SUPERFAMILY--SSF54373, at 354,444 to 356,897 11216

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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351,420 + -0.1
352,105 - 11215 mRNA_2847 0.28 -1.1
352,114 - 11215 mRNA_2847 0.28 +1.3
352,188 - 11215 mRNA_2847 0.32 -0.5
352,226 + 11215 mRNA_2847 0.34 +1.3
352,231 - 11215 mRNA_2847 0.34 -0.9
352,563 - 11215 mRNA_2847 0.51 +0.4
352,612 + 11215 mRNA_2847 0.54 -2.1
353,366 - +1.1
353,644 - +0.2
353,672 + -0.2
353,951 + -1.5
353,956 - -0.1
353,957 - +0.7
353,966 - +0.0
353,970 - -0.3
353,990 + +0.1
354,300 - -0.4
354,327 + -0.3

Or see this region's nucleotide sequence