Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2950

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11318 and 11319 are separated by 485 nucleotides mRNA_2950: 11318 - SUPERFAMILY--SSF56112, at 633,038 to 634,414 11318 mRNA_2951: 11319 - Hypothetical Protein, at 634,900 to 635,986 11319

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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632,122 + -0.8
632,249 + -0.4
632,460 - +0.7
632,647 - -0.5
632,702 - +0.2
632,790 - -0.6
632,915 - -0.8
633,081 - -0.8
633,085 + +0.7
633,104 + +2.2
633,276 - 11318 mRNA_2950 0.17 -1.4
633,410 + 11318 mRNA_2950 0.27 +0.3
633,699 + 11318 mRNA_2950 0.48 +0.3
633,985 - 11318 mRNA_2950 0.69 +0.1
633,985 - 11318 mRNA_2950 0.69 -0.2
634,116 + 11318 mRNA_2950 0.78 +0.2
634,229 + 11318 mRNA_2950 0.86 +0.6
634,250 + 11318 mRNA_2950 0.88 -0.2
634,401 + -0.0
634,419 - -1.1
634,843 + -4.2
634,945 - +0.0
635,036 + 11319 mRNA_2951 0.13 -1.1
635,154 + 11319 mRNA_2951 0.23 -0.4
635,204 + 11319 mRNA_2951 0.28 -0.1
635,264 - 11319 mRNA_2951 0.33 -0.8

Or see this region's nucleotide sequence