Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2964

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11332 and 11333 are separated by 496 nucleotides mRNA_2964: 11332 - K00965 galT, GALT UDPglucose--hexose-1-phosphate uridylyltransferase, at 664,147 to 666,205 11332 mRNA_2965: 11333 - KOG1721 FOG Zn-finger, at 666,702 to 669,525 11333

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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663,186 - +0.2
663,190 - +0.1
663,193 + -0.4
663,196 - +1.0
663,205 + -0.0
663,209 + -0.2
663,219 + -1.0
663,220 - +0.4
663,221 - -1.9
663,226 + -2.0
663,228 - -0.1
663,230 - -1.1
663,233 - -0.7
663,233 + +0.5
663,236 + +0.2
663,240 + +0.7
663,243 + -0.4
663,249 + +1.0
663,368 + +0.4
663,405 - -0.2
663,425 + +0.3
663,436 - -0.3
663,499 + -0.6
663,508 - -0.0
663,680 - +0.3
663,692 + +0.8
663,848 + -0.1
663,974 + +1.0
664,076 - -0.5
664,101 - -0.9
664,119 + +1.9
664,209 - +0.0
664,241 - -1.3
664,256 + -1.7
664,258 + -0.7
664,273 + +0.9
664,359 + 11332 mRNA_2964 0.10 -0.9
664,538 + 11332 mRNA_2964 0.19 +0.3
664,686 - 11332 mRNA_2964 0.26 -1.8
664,690 + 11332 mRNA_2964 0.26 +0.0
664,853 + 11332 mRNA_2964 0.34 +0.4
664,972 - 11332 mRNA_2964 0.40 -0.7
665,018 + 11332 mRNA_2964 0.42 -0.3
665,274 + 11332 mRNA_2964 0.55 +0.8
665,284 + 11332 mRNA_2964 0.55 -0.1
665,285 - 11332 mRNA_2964 0.55 -0.3
665,399 - 11332 mRNA_2964 0.61 -2.7
665,563 + 11332 mRNA_2964 0.69 -0.1
665,693 - 11332 mRNA_2964 0.75 +1.2
665,842 + 11332 mRNA_2964 0.82 -1.1
666,254 - +0.6
666,271 + +0.2
666,423 + -0.3
666,551 - -0.1
666,612 - -0.5
666,632 + -1.6
666,634 - +0.1
666,673 + +1.2
666,702 + +1.1
666,930 + +0.1
667,019 + 11333 mRNA_2965 0.11 -0.6

Or see this region's nucleotide sequence