Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2968

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11335 and 11336 are separated by 155 nucleotides11336 and 11337 are separated by 273 nucleotides11337 and 11338 are separated by 305 nucleotides mRNA_2967: 11335 - Hypothetical Protein, at 671,807 to 673,227 11335 mRNA_2968: 11336 - Hypothetical Protein, at 673,383 to 681,780 11336 mRNA_2969: 11337 - Hypothetical Protein, at 682,054 to 682,344 11337 mRNA_2970: 11338 - K00219 fadH 2,4-dienoyl-CoA reductase (NADPH2), at 682,650 to 684,031 11338

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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672,432 - 11335 mRNA_2967 0.44 -0.2
672,440 + 11335 mRNA_2967 0.45 -0.3
672,457 - 11335 mRNA_2967 0.46 +0.0
672,563 - 11335 mRNA_2967 0.53 +0.3
672,594 + 11335 mRNA_2967 0.55 -0.0
672,627 + 11335 mRNA_2967 0.58 +0.1
672,766 - 11335 mRNA_2967 0.67 -0.1
672,800 - 11335 mRNA_2967 0.70 -0.2
672,806 + 11335 mRNA_2967 0.70 +0.3
672,859 - 11335 mRNA_2967 0.74 -0.5
673,013 - 11335 mRNA_2967 0.85 -0.1
673,030 + 11335 mRNA_2967 0.86 +0.5
673,186 - -0.1
673,219 + +0.3
673,343 + -0.4
673,353 + +0.1
673,441 - +0.1
673,555 - -0.1
673,614 - -0.9
673,624 + -1.2
673,627 - +2.5
673,645 + -0.0
673,807 - +0.4
673,841 - -1.2
673,983 - -0.5
673,995 + +0.6
674,045 - -0.7
674,086 - -0.4
674,122 + +0.3
674,383 + 11336 mRNA_2968 0.12 -0.1
674,386 - 11336 mRNA_2968 0.12 +0.1
674,454 - 11336 mRNA_2968 0.13 -0.1
674,529 - 11336 mRNA_2968 0.14 +0.1
674,636 + 11336 mRNA_2968 0.15 -0.1
674,638 + 11336 mRNA_2968 0.15 +0.0
674,702 - 11336 mRNA_2968 0.16 -0.2
674,748 + 11336 mRNA_2968 0.16 +0.4
674,762 + 11336 mRNA_2968 0.16 +0.5
674,812 - 11336 mRNA_2968 0.17 -0.5
674,815 + 11336 mRNA_2968 0.17 -0.3
674,818 - 11336 mRNA_2968 0.17 -0.8
674,859 - 11336 mRNA_2968 0.18 +0.3
674,998 - 11336 mRNA_2968 0.19 +1.1
675,079 + 11336 mRNA_2968 0.20 -1.9
675,112 + 11336 mRNA_2968 0.21 +0.0
675,112 + 11336 mRNA_2968 0.21 -0.9
675,154 + 11336 mRNA_2968 0.21 +0.7
675,371 + 11336 mRNA_2968 0.24 -1.3
675,395 + 11336 mRNA_2968 0.24 +0.2
675,495 + 11336 mRNA_2968 0.25 +0.2
675,804 + 11336 mRNA_2968 0.29 -0.8
675,805 - 11336 mRNA_2968 0.29 +1.6
675,810 + 11336 mRNA_2968 0.29 -0.1
675,827 - 11336 mRNA_2968 0.29 +0.4
675,835 - 11336 mRNA_2968 0.29 +1.0
675,952 - 11336 mRNA_2968 0.31 -0.4
675,998 + 11336 mRNA_2968 0.31 +0.2
676,002 + 11336 mRNA_2968 0.31 -0.2
676,019 - 11336 mRNA_2968 0.31 -1.7
676,024 + 11336 mRNA_2968 0.31 +1.7
676,027 - 11336 mRNA_2968 0.31 -0.5
676,094 - 11336 mRNA_2968 0.32 -1.1
676,153 + 11336 mRNA_2968 0.33 +0.5
676,322 - 11336 mRNA_2968 0.35 +0.8
676,384 - 11336 mRNA_2968 0.36 +0.5
676,385 + 11336 mRNA_2968 0.36 +0.6
676,425 + 11336 mRNA_2968 0.36 -1.3
676,572 + 11336 mRNA_2968 0.38 -0.7
676,575 - 11336 mRNA_2968 0.38 +0.8
676,581 - 11336 mRNA_2968 0.38 -0.5
676,682 + 11336 mRNA_2968 0.39 -0.7
676,719 - 11336 mRNA_2968 0.40 -0.8
676,814 + 11336 mRNA_2968 0.41 +0.1
676,887 - 11336 mRNA_2968 0.42 -1.2
676,998 - 11336 mRNA_2968 0.43 +0.7
677,028 - 11336 mRNA_2968 0.43 -0.4
677,073 + 11336 mRNA_2968 0.44 -0.1
677,151 + 11336 mRNA_2968 0.45 +0.3
677,273 + 11336 mRNA_2968 0.46 -1.8
677,323 + 11336 mRNA_2968 0.47 +0.5
677,405 - 11336 mRNA_2968 0.48 -1.1
677,448 - 11336 mRNA_2968 0.48 -0.9
677,724 - 11336 mRNA_2968 0.52 +0.7
677,796 + 11336 mRNA_2968 0.53 +0.1
677,897 - 11336 mRNA_2968 0.54 -0.8
677,900 - 11336 mRNA_2968 0.54 -3.9
677,904 + 11336 mRNA_2968 0.54 +0.7
677,907 + 11336 mRNA_2968 0.54 -0.6
677,913 + 11336 mRNA_2968 0.54 +0.0
677,933 + 11336 mRNA_2968 0.54 +0.4
678,062 - 11336 mRNA_2968 0.56 -0.5
678,160 - 11336 mRNA_2968 0.57 +1.9
678,161 - 11336 mRNA_2968 0.57 -1.3
678,166 - 11336 mRNA_2968 0.57 -1.0
678,364 - 11336 mRNA_2968 0.59 -0.5
678,417 + 11336 mRNA_2968 0.60 -0.6
678,520 - 11336 mRNA_2968 0.61 -0.3
678,590 - 11336 mRNA_2968 0.62 -0.2
678,747 - 11336 mRNA_2968 0.64 -1.0
678,749 - 11336 mRNA_2968 0.64 +0.1
678,769 - 11336 mRNA_2968 0.64 +0.3
678,781 + 11336 mRNA_2968 0.64 -0.7
678,908 - 11336 mRNA_2968 0.66 +0.7
679,011 + 11336 mRNA_2968 0.67 +0.6
679,047 - 11336 mRNA_2968 0.67 +0.3
679,047 + 11336 mRNA_2968 0.67 -0.0
679,059 + 11336 mRNA_2968 0.68 -0.1
679,068 + 11336 mRNA_2968 0.68 +0.5
679,070 + 11336 mRNA_2968 0.68 +1.2
679,079 + 11336 mRNA_2968 0.68 -0.4
679,218 - 11336 mRNA_2968 0.69 +0.0
679,223 + 11336 mRNA_2968 0.70 +0.0
679,234 + 11336 mRNA_2968 0.70 +0.1
679,258 + 11336 mRNA_2968 0.70 +0.6
679,318 + 11336 mRNA_2968 0.71 -0.6
679,354 - 11336 mRNA_2968 0.71 +0.1
679,369 + 11336 mRNA_2968 0.71 +0.5
679,381 + 11336 mRNA_2968 0.71 +1.0
679,527 - 11336 mRNA_2968 0.73 -0.5
679,682 + 11336 mRNA_2968 0.75 -1.2
679,683 + 11336 mRNA_2968 0.75 -0.2
679,683 + 11336 mRNA_2968 0.75 -0.2
679,761 + 11336 mRNA_2968 0.76 +0.6
679,829 + 11336 mRNA_2968 0.77 -0.7
679,914 - 11336 mRNA_2968 0.78 -0.6
679,925 + 11336 mRNA_2968 0.78 -1.5
679,929 - 11336 mRNA_2968 0.78 -0.6
679,930 + 11336 mRNA_2968 0.78 -1.4
679,932 - 11336 mRNA_2968 0.78 +1.4
679,990 + 11336 mRNA_2968 0.79 +0.5
680,097 + 11336 mRNA_2968 0.80 -0.9
680,111 - 11336 mRNA_2968 0.80 +1.5
680,189 - 11336 mRNA_2968 0.81 +0.1
680,223 + 11336 mRNA_2968 0.81 +0.7
680,223 - 11336 mRNA_2968 0.81 +0.2
680,284 - 11336 mRNA_2968 0.82 -1.1
680,365 - 11336 mRNA_2968 0.83 +0.9
680,526 - 11336 mRNA_2968 0.85 +0.0
680,529 - 11336 mRNA_2968 0.85 +0.4
680,635 + 11336 mRNA_2968 0.86 -0.0
680,730 + 11336 mRNA_2968 0.87 +0.6
680,735 - 11336 mRNA_2968 0.88 +1.0
680,865 - 11336 mRNA_2968 0.89 +0.1
680,883 + 11336 mRNA_2968 0.89 -0.4
680,892 + 11336 mRNA_2968 0.89 +0.1
680,903 + 11336 mRNA_2968 0.90 -0.1
680,921 - 11336 mRNA_2968 0.90 +1.3
680,982 - -0.3
680,982 - -1.0
681,063 - -2.5
681,224 - -0.1
681,232 - -1.0
681,232 - -0.8
681,245 + +0.1
681,251 - -0.2
681,347 + +0.3
681,367 - +0.3
681,440 + -0.3
681,511 - +0.2
681,512 + -0.4
681,563 + +0.1
681,647 + -0.2
681,662 + -0.7
681,675 + -1.1
681,762 - -0.3
681,762 - -0.4
681,765 + +0.1
681,824 - -0.4
681,951 + -0.1
681,961 - -0.9
681,962 + -0.1
682,008 - +0.1
682,253 - 11337 mRNA_2969 0.68 -0.3
682,265 - 11337 mRNA_2969 0.73 +2.8
682,282 + 11337 mRNA_2969 0.78 -0.5
682,397 - -0.4
682,527 - -0.7
682,542 - -1.4
682,549 + -1.0
682,585 - -0.3
682,587 - -0.4
682,588 + -0.1
682,779 - +0.4

Or see this region's nucleotide sequence