Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3016

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11383 and 11384 are separated by 223 nucleotides mRNA_3015: 11383 - KOG3252 Uncharacterized conserved protein, at 79,756 to 80,863 11383 mRNA_3016: 11384 - Hypothetical Protein, at 81,087 to 81,376 11384

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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80,281 + 11383 mRNA_3015 0.47 -0.5
80,997 - -0.7
81,015 + +0.6
81,031 - -0.5
81,078 + -0.4
81,106 + -0.9
81,145 - 11384 mRNA_3016 0.20 +0.0
81,153 - 11384 mRNA_3016 0.23 +1.4
81,154 + 11384 mRNA_3016 0.23 +0.2
81,203 - 11384 mRNA_3016 0.40 -0.5
81,217 - 11384 mRNA_3016 0.45 -0.8
81,227 + 11384 mRNA_3016 0.48 +0.3
81,229 - 11384 mRNA_3016 0.49 -0.7
81,251 + 11384 mRNA_3016 0.57 -0.3
81,258 + 11384 mRNA_3016 0.59 +0.5
81,260 + 11384 mRNA_3016 0.60 +0.3
81,283 + 11384 mRNA_3016 0.68 -0.4
81,372 + -0.6
81,398 - -1.3
81,402 + -0.2
81,409 + -0.4
81,409 + -0.5
81,414 + -0.7
81,425 - -0.9
81,432 - +0.1
81,441 + -0.9
81,441 + +0.8
81,519 - -0.4
81,552 - -0.4
81,579 + +0.0
81,732 - -0.6
81,745 - -0.8
81,746 + +0.5
81,748 + -1.2
81,789 - +0.8
81,812 - +0.8

Or see this region's nucleotide sequence