Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3034

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11402 and 11403 are separated by 317 nucleotides mRNA_3034: 11402 - K05767 IQGAP2_3 Ras GTPase-activating-like protein IQGAP2/3, at 148,393 to 151,658 11402 mRNA_3035: 11403 - K03661 ATPeV0B, ATP6F V-type H+-transporting ATPase 21kDa proteolipid subunit, at 151,976 to 152,968 11403

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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147,413 - -0.3
147,524 - -2.3
147,799 + -0.7
147,977 + -0.2
147,990 - +1.7
148,016 + +0.4
148,026 + +0.5
148,031 + +0.1
148,040 + -0.1
148,065 + -1.2
148,093 - -0.5
148,118 - +0.1
148,122 - -1.4
148,132 - +0.1
148,142 + -0.8
148,142 + +0.3
148,299 - -0.3
148,301 - +0.3
148,422 + +0.5
148,428 + +0.9
148,453 + +1.4
148,582 - -0.5
148,700 + +0.8
148,727 + 11402 mRNA_3034 0.10 +1.2
148,832 - 11402 mRNA_3034 0.13 +0.2
148,992 + 11402 mRNA_3034 0.18 +0.1
149,009 - 11402 mRNA_3034 0.19 +2.3
149,018 - 11402 mRNA_3034 0.19 +0.8
149,027 + 11402 mRNA_3034 0.19 +0.4
149,191 - 11402 mRNA_3034 0.24 +0.2
150,187 - 11402 mRNA_3034 0.55 -1.5
150,340 + 11402 mRNA_3034 0.60 +0.5
150,346 + 11402 mRNA_3034 0.60 +0.9
150,889 - 11402 mRNA_3034 0.76 +0.8
151,009 + 11402 mRNA_3034 0.80 -0.2
151,253 - 11402 mRNA_3034 0.88 -1.6
151,604 - +0.5
151,652 - +0.4
151,769 + +0.2
151,874 + -0.4

Or see this region's nucleotide sequence