Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3042

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11410 and 11411 are separated by 303 nucleotides mRNA_3042: 11410 - KOG0252 Inorganic phosphate transporter, at 172,633 to 175,207 11410 mRNA_3043: 11411 - K18159 NDUFAF1, CIA30 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1, at 175,511 to 176,675 11411

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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171,789 + -0.9
172,176 + -1.1
172,400 - +0.3
172,670 + -0.6
172,698 - +0.7
172,741 + -0.3
173,232 + 11410 mRNA_3042 0.23 -0.1
173,293 - 11410 mRNA_3042 0.26 +0.4
173,304 - 11410 mRNA_3042 0.26 -1.0
173,306 + 11410 mRNA_3042 0.26 +0.1
173,324 - 11410 mRNA_3042 0.27 +0.7
173,420 + 11410 mRNA_3042 0.31 -0.6
173,429 - 11410 mRNA_3042 0.31 +0.2
173,905 - 11410 mRNA_3042 0.49 -0.4
173,928 - 11410 mRNA_3042 0.50 +0.1
174,171 + 11410 mRNA_3042 0.60 +0.7
175,031 + -1.2
175,070 + -1.1
175,347 + -1.1
175,457 - +0.3
175,462 - -0.3
175,468 - -0.3
175,491 - -0.3

Or see this region's nucleotide sequence