Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3069

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11436 and 11437 are separated by 215 nucleotides11437 and 11438 are separated by 234 nucleotides mRNA_3068: 11436 - K02434 gatB, PET112 aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B, at 236,980 to 239,400 11436 mRNA_3069: 11437 - KOG2505 Ankyrin repeat protein, at 239,616 to 241,978 11437 mRNA_3070: 11438 - Hypothetical Protein, at 242,213 to 243,874 11438

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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238,667 + 11436 mRNA_3068 0.70 +0.2
238,754 + 11436 mRNA_3068 0.73 -0.1
239,052 - 11436 mRNA_3068 0.86 -0.3
239,159 - -1.7
239,177 + +0.1
239,178 + -1.5
239,181 - -1.1
239,184 - -1.5
239,200 + +0.3
239,206 - +0.5
239,208 - -0.4
239,209 + -0.4
239,211 + +0.1
239,318 + +0.4
239,321 + +0.3
239,335 - -0.2
239,347 - +1.1
239,353 + +0.8
239,365 + -0.6
239,369 - -1.1
239,372 + +0.6
239,474 - -0.6
239,487 - -0.7
239,496 + -1.5
239,496 + +0.2
239,511 + -0.6
239,516 + -0.3
239,521 - +0.1
239,632 - -1.1
239,671 + +1.0
239,671 + +0.7
239,830 + -1.7
239,919 - 11437 mRNA_3069 0.13 +0.7
239,973 + 11437 mRNA_3069 0.15 -0.2
240,355 - 11437 mRNA_3069 0.31 +0.1
240,491 - 11437 mRNA_3069 0.37 +1.9
240,491 - 11437 mRNA_3069 0.37 +0.8
240,498 + 11437 mRNA_3069 0.37 -1.2
240,637 - 11437 mRNA_3069 0.43 +0.4
240,652 + 11437 mRNA_3069 0.44 +0.7
240,653 + 11437 mRNA_3069 0.44 -0.3
240,734 + 11437 mRNA_3069 0.47 +0.3
240,795 + 11437 mRNA_3069 0.50 -0.9
240,798 - 11437 mRNA_3069 0.50 -1.7
241,052 - 11437 mRNA_3069 0.61 -0.2
241,053 + 11437 mRNA_3069 0.61 +2.7
241,058 - 11437 mRNA_3069 0.61 -0.0
241,480 + 11437 mRNA_3069 0.79 -1.8
241,489 - 11437 mRNA_3069 0.79 +0.3
241,624 - 11437 mRNA_3069 0.85 -0.6
241,884 - -0.3
241,901 + -0.5
242,051 + -0.9
242,545 + 11438 mRNA_3070 0.20 -0.2
242,644 + 11438 mRNA_3070 0.26 +0.7
242,662 - 11438 mRNA_3070 0.27 +0.0
242,963 - 11438 mRNA_3070 0.45 +0.7

Or see this region's nucleotide sequence