Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3071

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11439 and 11440 are separated by 976 nucleotides mRNA_3071: 11439 - Hypothetical Protein, at 245,578 to 247,225 11439 mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248,202 to 249,247 11440

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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244,721 - +1.7
244,732 - -1.3
244,839 - +0.2
244,865 + -0.0
244,987 + -0.2
245,018 + +0.3
245,171 - +0.2
245,277 - -1.7
245,292 + -0.6
245,331 - -0.1
245,460 + +0.3
245,873 + 11439 mRNA_3071 0.18 -0.3
246,163 + 11439 mRNA_3071 0.35 +0.1
246,296 - 11439 mRNA_3071 0.44 -0.0
246,359 - 11439 mRNA_3071 0.47 +0.4
246,440 - 11439 mRNA_3071 0.52 -0.9
246,462 - 11439 mRNA_3071 0.54 -0.7
246,473 + 11439 mRNA_3071 0.54 -0.0
246,568 + 11439 mRNA_3071 0.60 -0.1
246,578 - 11439 mRNA_3071 0.61 +0.4
246,579 - 11439 mRNA_3071 0.61 -0.3
246,584 + 11439 mRNA_3071 0.61 +0.3
246,584 + 11439 mRNA_3071 0.61 +0.1
246,584 + 11439 mRNA_3071 0.61 +0.0
246,584 + 11439 mRNA_3071 0.61 -0.5
246,584 + 11439 mRNA_3071 0.61 -0.1
246,584 + 11439 mRNA_3071 0.61 -0.7
246,584 + 11439 mRNA_3071 0.61 +0.5
246,620 + 11439 mRNA_3071 0.63 -0.5
246,657 + 11439 mRNA_3071 0.65 -0.1
246,696 - 11439 mRNA_3071 0.68 -1.3
246,753 - 11439 mRNA_3071 0.71 +0.3
246,753 + 11439 mRNA_3071 0.71 +0.9
246,828 + 11439 mRNA_3071 0.76 +0.5
246,865 + 11439 mRNA_3071 0.78 -1.0
246,934 - 11439 mRNA_3071 0.82 -0.2
247,161 + +0.1
247,284 + +0.2
247,294 - -0.1
247,297 + -0.4
247,311 - +0.0
247,313 - -0.4
247,314 + +0.1
247,444 - -0.3
247,467 - +0.5
247,589 - +0.1
247,597 - -2.2
247,599 + -0.9
247,603 - -1.5
247,605 + +0.9
247,615 + +0.8
247,617 - +0.4
247,618 - +0.6
247,620 + -1.4
247,623 + -0.5
247,625 - -2.8
247,745 + -0.4
247,757 + -0.2
247,765 - +0.6
247,771 + +0.8
247,868 + -1.2
247,908 - -0.5
247,917 - -0.3
247,922 + -1.0
248,052 - -0.3
248,054 - -0.3
248,064 + +0.1
248,077 - +0.7

Or see this region's nucleotide sequence