Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3072

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11439 and 11440 are separated by 976 nucleotides11440 and 11441 are separated by 153 nucleotides11441 and 11442 are separated by 45 nucleotides mRNA_3071: 11439 - Hypothetical Protein, at 245,578 to 247,225 11439 mRNA_3072: 11440 - KOG1203 Predicted dehydrogenase, at 248,202 to 249,247 11440 mRNA_3073: 11441 - ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 249,401 to 250,160 11441 mRNA_3074: 11442 - KOG4650 Predicted steroid reductase, at 250,206 to 251,968 11442

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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247,284 + +0.2
247,294 - -0.1
247,297 + -0.4
247,311 - +0.0
247,313 - -0.4
247,314 + +0.1
247,444 - -0.3
247,467 - +0.5
247,589 - +0.1
247,597 - -2.2
247,599 + -0.9
247,603 - -1.5
247,605 + +0.9
247,615 + +0.8
247,617 - +0.4
247,618 - +0.6
247,620 + -1.4
247,623 + -0.5
247,625 - -2.8
247,745 + -0.4
247,757 + -0.2
247,765 - +0.6
247,771 + +0.8
247,868 + -1.2
247,908 - -0.5
247,917 - -0.3
247,922 + -1.0
248,052 - -0.3
248,054 - -0.3
248,064 + +0.1
248,077 - +0.7
248,381 + 11440 mRNA_3072 0.17 +0.1
248,413 + 11440 mRNA_3072 0.20 +0.7
248,507 + 11440 mRNA_3072 0.29 +0.3
248,537 - 11440 mRNA_3072 0.32 -0.3
248,546 + 11440 mRNA_3072 0.33 -0.4
248,651 + 11440 mRNA_3072 0.43 -0.8
248,686 - 11440 mRNA_3072 0.46 -2.8
248,827 - 11440 mRNA_3072 0.60 +0.0
248,923 - 11440 mRNA_3072 0.69 +0.2
248,928 + 11440 mRNA_3072 0.69 +0.6
248,964 + 11440 mRNA_3072 0.73 -0.6
248,973 + 11440 mRNA_3072 0.74 +0.3
249,059 + 11440 mRNA_3072 0.82 +0.3
249,406 + +1.5
249,430 + +0.0
249,552 + 11441 mRNA_3073 0.20 +1.0
249,695 + 11441 mRNA_3073 0.39 -1.1
249,696 - 11441 mRNA_3073 0.39 +0.3
249,701 + 11441 mRNA_3073 0.39 -1.5
249,762 - 11441 mRNA_3073 0.47 -0.2
249,822 - 11441 mRNA_3073 0.55 +0.4
249,841 + 11441 mRNA_3073 0.58 +0.4
249,845 + 11441 mRNA_3073 0.58 -0.0
249,858 + 11441 mRNA_3073 0.60 -0.5
249,860 + 11441 mRNA_3073 0.60 +0.6
249,861 + 11441 mRNA_3073 0.61 -0.5
249,898 + 11441 mRNA_3073 0.65 -1.4
249,927 - 11441 mRNA_3073 0.69 +0.3
249,978 + 11441 mRNA_3073 0.76 -0.2
249,983 - 11441 mRNA_3073 0.77 -1.1
250,002 + 11441 mRNA_3073 0.79 -1.4
250,015 + 11441 mRNA_3073 0.81 -1.5
250,017 - 11441 mRNA_3073 0.81 -0.7
250,017 - 11441 mRNA_3073 0.81 -0.2
250,030 - 11441 mRNA_3073 0.83 -0.9
250,132 + +0.1
250,137 - -0.3
250,138 + -0.6
250,143 + -0.5
250,166 - -0.1

Or see this region's nucleotide sequence