Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3118

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11485 and 11486 are separated by 581 nucleotides11486 and 11487 are separated by 659 nucleotides mRNA_3117: 11485 - KOG1110 Putative steroid membrane receptor Hpr6.6/25-Dx, at 357,751 to 358,834 11485 mRNA_3118: 11486 - K01881 PARS, proS prolyl-tRNA synthetase, at 359,416 to 362,125 11486 mRNA_3119: 11487 - BLAST Spindle pole body protein pcp1 [Hypsizygus marmoreus], at 362,785 to 367,104 11487

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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358,471 - 11485 mRNA_3117 0.66 +0.5
358,472 + 11485 mRNA_3117 0.67 +1.2
358,614 + 11485 mRNA_3117 0.80 -0.1
358,627 - 11485 mRNA_3117 0.81 +1.5
358,627 + 11485 mRNA_3117 0.81 -0.7
358,638 - 11485 mRNA_3117 0.82 -0.8
358,734 + +0.6
358,761 - +0.0
358,782 + -0.4
358,892 + +1.1
358,905 + -0.7
358,905 - +2.2
358,907 - -0.5
358,912 + +0.3
358,916 - -0.7
358,927 + -0.3
358,930 + +1.2
358,934 + +0.0
359,049 - -0.9
359,052 - +0.7
359,058 - +0.3
359,059 + +0.7
359,064 - +0.6
359,070 + +1.2
359,084 + -0.6
359,086 + +1.4
359,195 - -0.2
359,231 - +0.2
359,231 - -0.7
359,269 + -0.7
359,303 - -0.2
359,346 - +0.0
359,369 + -1.4
359,492 - +0.1
359,497 + +1.7
359,528 - +0.1
359,549 - -0.6
359,553 + +0.4
359,618 - -0.9
359,644 - -2.4
359,659 + +0.1
359,668 + -0.6
359,668 + +0.0
359,801 - 11486 mRNA_3118 0.14 +0.8
359,804 + 11486 mRNA_3118 0.14 +0.8
359,947 - 11486 mRNA_3118 0.20 -0.8
359,961 - 11486 mRNA_3118 0.20 +0.6
360,161 + 11486 mRNA_3118 0.27 -0.1
360,197 - 11486 mRNA_3118 0.29 -0.1
360,365 - 11486 mRNA_3118 0.35 +0.7
360,377 - 11486 mRNA_3118 0.35 -0.3
360,482 + 11486 mRNA_3118 0.39 -2.0
360,832 + 11486 mRNA_3118 0.52 -1.6
360,930 + 11486 mRNA_3118 0.56 +0.8
360,956 - 11486 mRNA_3118 0.57 +0.1
361,004 + 11486 mRNA_3118 0.59 -0.2
361,107 - 11486 mRNA_3118 0.62 -0.3
361,162 + 11486 mRNA_3118 0.64 +0.3
361,436 - 11486 mRNA_3118 0.75 -0.2
361,446 - 11486 mRNA_3118 0.75 +0.4
361,565 + 11486 mRNA_3118 0.79 -1.3
361,692 - 11486 mRNA_3118 0.84 +0.2
361,701 - 11486 mRNA_3118 0.84 +0.2
361,716 - 11486 mRNA_3118 0.85 -0.5
361,744 + 11486 mRNA_3118 0.86 -0.7
362,107 - -1.4
362,201 - +0.0
362,417 - -0.5
362,461 + +0.5
362,669 - -0.7
362,684 + +0.6
362,753 + -0.1
362,863 + +0.8
362,910 + -1.2
362,970 + +0.9
363,030 + -0.4

Or see this region's nucleotide sequence