Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3130

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11498 and 11499 are separated by 306 nucleotides mRNA_3130: 11498 - KOG2109 WD40 repeat protein, at 387,441 to 391,334 11498 mRNA_3131: 11499 - KOG1230 Protein containing repeated kelch motifs, at 391,641 to 394,728 11499

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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386,534 + +0.2
386,545 - -1.7
386,549 - -0.2
386,566 - +0.4
386,713 - -0.3
386,731 + -0.6
386,845 - -0.1
386,855 - +0.4
387,131 + -0.6
387,132 - -0.2
387,132 - -0.4
387,145 + -0.6
387,148 + +0.7
387,152 - -1.6
387,154 + +0.1
387,154 + -0.2
387,159 + -1.5
387,161 + -0.7
387,168 + -1.8
387,173 + +0.8
387,292 - -1.6
387,300 + -0.3
387,307 + +1.0
387,308 - -0.6
387,312 - -3.1
387,313 + +0.9
387,332 + -0.2
387,333 + +0.4
387,464 - -0.3
387,465 - +0.2
387,472 + -1.0
387,489 + +0.9
387,515 + -1.3
387,607 + -0.2
387,608 - +1.4
387,617 - -0.4
387,633 + -0.0
387,894 - 11498 mRNA_3130 0.12 +0.5
387,899 + 11498 mRNA_3130 0.12 +0.5
387,899 + 11498 mRNA_3130 0.12 +0.9
388,068 + 11498 mRNA_3130 0.16 +0.0
388,225 - 11498 mRNA_3130 0.20 +1.9
388,343 - 11498 mRNA_3130 0.23 +0.4
388,364 - 11498 mRNA_3130 0.24 -1.8
388,371 + 11498 mRNA_3130 0.24 -0.4
388,444 - 11498 mRNA_3130 0.26 -0.1
388,463 + 11498 mRNA_3130 0.26 -0.7
388,471 - 11498 mRNA_3130 0.26 -2.0
388,752 + 11498 mRNA_3130 0.34 +0.5
388,914 + 11498 mRNA_3130 0.38 -0.0
389,076 - 11498 mRNA_3130 0.42 +1.0
389,124 - 11498 mRNA_3130 0.43 -0.4
389,222 - 11498 mRNA_3130 0.46 +0.0
389,392 + 11498 mRNA_3130 0.50 +0.0
389,397 - 11498 mRNA_3130 0.50 +0.9
389,510 + 11498 mRNA_3130 0.53 +0.3
389,779 - 11498 mRNA_3130 0.60 -2.3
389,834 + 11498 mRNA_3130 0.61 +0.3
389,985 + 11498 mRNA_3130 0.65 -0.7
390,138 + 11498 mRNA_3130 0.69 +0.4
390,270 - 11498 mRNA_3130 0.73 -0.3
390,376 + 11498 mRNA_3130 0.75 +0.4
390,417 + 11498 mRNA_3130 0.76 +0.4
390,538 + 11498 mRNA_3130 0.80 +0.9
390,549 - 11498 mRNA_3130 0.80 -0.3
390,703 - 11498 mRNA_3130 0.84 -0.5
390,706 + 11498 mRNA_3130 0.84 -0.8
390,719 + 11498 mRNA_3130 0.84 +0.3
390,721 + 11498 mRNA_3130 0.84 -0.1
390,854 - 11498 mRNA_3130 0.88 +0.6
390,896 - 11498 mRNA_3130 0.89 +1.0
391,116 - -0.1
391,132 + -1.1
391,152 - -0.1
391,305 + -0.1
391,309 + +0.0
391,424 - -0.2
391,585 + -1.1
391,588 + +0.3
391,622 - -0.2
392,104 - 11499 mRNA_3131 0.15 +0.7
392,295 - 11499 mRNA_3131 0.21 -1.1
392,303 + 11499 mRNA_3131 0.21 +0.2
392,319 - 11499 mRNA_3131 0.22 -0.8
392,331 - 11499 mRNA_3131 0.22 +0.8

Or see this region's nucleotide sequence