Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: YNB Oleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
remove
12 + +0.3
12 + -1.1
15 + -0.3
16 + -0.2
18 + +0.8
22 + +1.3
25 + -1.1
57 - -0.2
61 - -0.4
62 + -0.2
62 + +0.1
66 + +0.4
72 + -0.9
72 + +0.4
72 + +0.3
75 + +0.3
78 - -0.8
105 + +0.1
110 - -1.2
114 + +0.2
115 + -2.7
118 + -0.7
122 + -0.2
122 - -0.4
124 + -0.1
135 + -1.1
147 + -0.2
157 + -0.5
161 + +0.1
168 + +1.3
174 + -0.4
177 - -1.0
228 + -1.7
247 + +0.2
252 - -1.4
253 - -2.7
255 + +0.0
258 + +0.2
264 - -0.2
269 + +0.2
269 - +0.2
274 + -0.1
275 - +0.7
277 + -2.4
280 + -0.5
280 + +0.9
283 - +0.9
285 - +0.8
287 + -0.4
287 + -3.1
288 + +0.3
292 - +0.6
293 + +0.3
298 + +0.0
305 - +0.1
314 + +0.5
320 + -0.4
368 + +0.2
370 - -0.8
372 + +0.4
382 + -0.3
384 + +1.0
391 + +0.2
391 - -0.5
397 + -1.9
397 - +0.1
402 + +0.6
405 + -0.5
423 - +0.6
430 + +1.5
440 + +0.4
446 + -1.4
470 + -0.1
524 + -1.8
532 + -0.6
545 - +0.7
557 + +0.2
569 + +0.3
570 - -3.0
583 + +0.2
584 + +0.3
603 - -0.1
603 + -0.4
634 - 11537 mRNA_3169 0.11 -0.1
636 + 11537 mRNA_3169 0.11 -0.0
646 + 11537 mRNA_3169 0.12 -0.8
661 + 11537 mRNA_3169 0.13 -0.7
667 + 11537 mRNA_3169 0.14 +1.2
698 + 11537 mRNA_3169 0.17 -0.2
704 - 11537 mRNA_3169 0.18 -0.7
705 - 11537 mRNA_3169 0.18 -0.2
721 - 11537 mRNA_3169 0.19 +0.3
725 + 11537 mRNA_3169 0.20 +1.8
738 - 11537 mRNA_3169 0.21 +0.2
849 + 11537 mRNA_3169 0.32 +0.0
871 + 11537 mRNA_3169 0.34 -1.0
883 + 11537 mRNA_3169 0.35 -0.4
894 + 11537 mRNA_3169 0.37 -0.7
895 + 11537 mRNA_3169 0.37 -0.4
922 + 11537 mRNA_3169 0.39 -0.7
965 - 11537 mRNA_3169 0.44 -0.3
1,012 - 11537 mRNA_3169 0.48 -0.0
1,026 + 11537 mRNA_3169 0.50 +0.2
1,026 + 11537 mRNA_3169 0.50 -1.1
1,105 + 11537 mRNA_3169 0.58 -0.9
1,123 + 11537 mRNA_3169 0.60 -0.3
1,141 + 11537 mRNA_3169 0.61 +1.1
1,142 + 11537 mRNA_3169 0.61 +0.3
1,165 + 11537 mRNA_3169 0.64 +0.3
1,174 - 11537 mRNA_3169 0.65 +0.8
1,174 + 11537 mRNA_3169 0.65 +0.2
1,259 + 11537 mRNA_3169 0.73 +1.3
1,265 + 11537 mRNA_3169 0.74 +0.0
1,268 + 11537 mRNA_3169 0.74 -0.8
1,269 - 11537 mRNA_3169 0.74 -0.2
1,288 - 11537 mRNA_3169 0.76 +0.7
1,297 + 11537 mRNA_3169 0.77 -1.5
1,303 - 11537 mRNA_3169 0.78 +0.6
1,399 + 11537 mRNA_3169 0.87 +0.4
1,412 - 11537 mRNA_3169 0.88 -0.7
1,419 - 11537 mRNA_3169 0.89 -0.3
1,423 - 11537 mRNA_3169 0.90 -2.7
1,429 - +1.3
1,453 + +0.1
1,459 + +0.3
1,459 + -1.4
1,460 - +0.8
1,461 + +0.3
1,462 + +0.3
1,467 + -0.1
1,470 - -0.3
1,474 - -0.1
1,485 + -0.4
1,520 + -0.4
1,523 + -0.5
1,531 - +0.5
1,537 + +0.4
1,541 + -0.1
1,562 + -0.7
1,567 + +0.5
1,572 + -0.7
1,582 - -1.4
1,584 - -1.0
1,589 + +0.2
1,596 - +0.6
1,601 - -0.1
1,602 + -0.9
1,605 + +0.5
1,609 + -0.8
1,616 + +0.6
1,636 + +0.2
1,654 + +1.0
1,656 - -1.7
1,666 + +0.5
1,675 - +0.9
1,682 - +0.2
1,697 - -0.0
1,709 + +0.5
1,709 - +1.0
1,711 + +0.4
1,718 - +0.5
1,719 + -0.5
1,722 - -0.5
1,723 + -0.3
1,725 - -0.6
1,725 - +0.1
1,727 + +0.2
1,730 + +0.5
1,731 + -0.1
1,732 + -0.5
1,732 + -0.2
1,734 + +0.1
1,734 + +0.8
1,734 + +0.6
1,739 - +0.1
1,740 + +0.8
1,744 - -0.4
1,747 + -0.1
1,749 + -1.0
1,759 + -0.7
1,759 + -1.0
1,759 + +0.4
1,761 + -1.2
1,763 + -0.7
1,765 + +0.8
1,767 + +0.1
1,769 + +1.2
1,772 + +0.4
1,772 + -0.4
1,774 + -2.1
1,774 + +0.8
1,775 + -1.7
1,776 - -1.8
1,776 + -0.2
1,777 + -0.4
1,778 + +0.4
1,778 - -0.9
1,781 - -1.1
1,783 - +1.0
1,783 - -0.4
1,783 - -2.4
1,783 - +0.0
1,784 + +1.2
1,789 + +1.0
1,789 - -0.6
1,791 + -0.4
1,792 + -0.0
1,793 + +0.0
1,795 + +0.7
1,796 + +0.8
1,796 - -0.9
1,798 + -0.4
1,800 + -0.5
1,801 + -0.1
1,805 + +0.0
1,805 + -3.0
1,807 + -0.7
1,813 - -1.4
1,814 + -0.5
1,814 + +0.4
1,818 - -1.3
1,851 - +0.4
1,874 + +0.5
1,881 - -0.3
1,885 - -0.3
1,891 - -1.9
1,896 - +0.1
1,912 + -2.7
1,912 + -0.3
1,914 - -0.5
1,916 - +0.7
1,917 - +1.0
1,919 + +1.2
1,922 - +0.8
1,923 - +0.6
1,934 - +0.1
1,935 + -1.4
1,938 - -0.6
1,938 - -1.0
1,940 - -0.9
1,941 + +0.0
1,941 + +0.7
1,942 + +0.0
1,943 - -0.6
1,944 + -0.3
1,944 - -1.4
1,945 - -1.7
1,945 + -0.1
1,946 - -0.9
1,947 + +0.0
1,960 - -0.9
1,968 + -0.2
1,980 + -1.0
2,015 + +0.3
2,067 - -0.5
2,081 - -0.5
2,091 + -2.1
2,220 + -1.1
2,229 - -1.8
2,235 - -0.7
2,237 - -1.1
2,242 + -0.8
2,242 - -0.3
2,245 - +0.4
2,248 - -2.0
2,251 + -1.0
2,254 - -0.5
2,261 + -1.3
2,262 - +0.4
2,266 + +0.2
2,268 + -0.7
2,400 + 11538 mRNA_3170 0.21 -0.4
2,401 - 11538 mRNA_3170 0.21 -1.5
2,404 + 11538 mRNA_3170 0.22 -0.2
2,414 + 11538 mRNA_3170 0.23 -0.1
2,420 - 11538 mRNA_3170 0.23 -2.0
2,439 + 11538 mRNA_3170 0.25 -0.8
2,446 + 11538 mRNA_3170 0.26 -0.5
2,470 - 11538 mRNA_3170 0.28 -1.9
2,516 - 11538 mRNA_3170 0.32 -0.8

Or see this region's nucleotide sequence