Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3177

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11544 and 11545 are separated by 277 nucleotides11545 and 11546 are separated by 468 nucleotides mRNA_3176: 11544 - K17301 COPB1, SEC26 coatomer subunit beta, at 17,776 to 21,807 11544 mRNA_3177: 11545 - KOG2164 Predicted E3 ubiquitin ligase, at 22,085 to 24,622 11545 mRNA_3178: 11546 - KOG4561 Uncharacterized conserved protein, contains TBC domain, at 25,091 to 26,696 11546

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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21,929 + +0.2
21,953 - +0.1
21,975 + +0.6
21,994 + -1.3
22,079 - -1.5
22,136 + +2.0
22,142 + -0.7
22,231 - +0.2
22,496 - 11545 mRNA_3177 0.16 -1.4
22,573 + 11545 mRNA_3177 0.19 -0.9
22,583 - 11545 mRNA_3177 0.20 -1.5
22,589 - 11545 mRNA_3177 0.20 -0.9
22,737 + 11545 mRNA_3177 0.26 -1.4
22,986 - 11545 mRNA_3177 0.36 -2.3
22,996 + 11545 mRNA_3177 0.36 -0.0
23,165 - 11545 mRNA_3177 0.43 +0.1
23,429 + 11545 mRNA_3177 0.53 -1.0
23,519 - 11545 mRNA_3177 0.57 +0.7
23,581 + 11545 mRNA_3177 0.59 -0.3
23,673 - 11545 mRNA_3177 0.63 -1.3
23,690 + 11545 mRNA_3177 0.63 -2.1
23,999 - 11545 mRNA_3177 0.75 -0.3
24,006 + 11545 mRNA_3177 0.76 -1.0
24,234 - 11545 mRNA_3177 0.85 -0.6
24,650 + -0.4
24,736 + -0.5
24,877 + +0.0
25,088 + +0.3
25,294 + 11546 mRNA_3178 0.13 +0.8
25,308 + 11546 mRNA_3178 0.14 +1.7
25,401 - 11546 mRNA_3178 0.19 +1.0
25,575 + 11546 mRNA_3178 0.30 -0.4

Or see this region's nucleotide sequence