Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3203

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11570 and 11571 are separated by 142 nucleotides11571 and 11572 are separated by 256 nucleotides mRNA_3202: 11570 - KOG2533 Permease of the major facilitator superfamily, at 79,575 to 81,413 11570 mRNA_3203: 11571 - Hypothetical Protein, at 81,556 to 81,888 11571 mRNA_3204: 11572 - SUPERFAMILY--SSF69118, at 82,145 to 83,066 11572

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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80,632 - 11570 mRNA_3202 0.57 -0.5
80,960 - 11570 mRNA_3202 0.75 -1.5
81,318 - +0.3
81,318 + +0.1
81,448 + -0.7
81,499 + -1.9
81,716 - 11571 mRNA_3203 0.48 +1.5
81,818 + 11571 mRNA_3203 0.79 +0.5
81,890 - +0.3
81,892 - -0.1
81,917 - -0.3
82,093 + -0.2
82,101 - -0.7
82,182 + -2.3
82,248 - 11572 mRNA_3204 0.11 +0.3
82,653 - 11572 mRNA_3204 0.55 -0.1

Or see this region's nucleotide sequence