Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3215

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11582 and 11583 are separated by 196 nucleotides11583 and 11584 are separated by 460 nucleotides mRNA_3214: 11582 - KOG3989 Beta-2-glycoprotein I, at 109,628 to 110,560 11582 mRNA_3215: 11583 - K17103 CHO1, pssA CDP-diacylglycerol---serine O-phosphatidyltransferase, at 110,757 to 112,157 11583 mRNA_3216: 11584 - K12881 THOC4, ALY THO complex subunit 4, at 112,618 to 114,116 11584

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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109,909 + 11582 mRNA_3214 0.30 -0.5
110,513 - +0.2
110,664 + +0.7
110,686 + -0.1
112,251 - +1.4
112,374 + -0.2
112,390 + +0.7
112,539 - +0.2
112,543 - -1.1
112,812 - 11584 mRNA_3216 0.13 -0.4
112,834 - 11584 mRNA_3216 0.14 +0.3
112,850 - 11584 mRNA_3216 0.15 -0.8

Or see this region's nucleotide sequence