Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3239

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11606 and 11607 are separated by 141 nucleotides mRNA_3238: 11606 - BLAST RNA replication protein [Rhizoctonia solani], at 184,726 to 188,428 11606 mRNA_3239: 11607 - K15425 PPP4R2 serine/threonine-protein phosphatase 4 regulatory subunit 2, at 188,570 to 189,872 11607

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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187,714 + 11606 mRNA_3238 0.81 +0.7
187,717 - 11606 mRNA_3238 0.81 -0.6
187,720 + 11606 mRNA_3238 0.81 -1.3
188,288 + -0.1
188,346 + -0.2
188,674 + -0.5
188,680 - -2.7
188,738 - 11607 mRNA_3239 0.13 -0.7
188,782 + 11607 mRNA_3239 0.16 -0.2
188,789 + 11607 mRNA_3239 0.17 +0.4
188,792 - 11607 mRNA_3239 0.17 -0.8
188,985 + 11607 mRNA_3239 0.32 +0.6
189,049 - 11607 mRNA_3239 0.37 -0.0
189,207 - 11607 mRNA_3239 0.49 -1.3
189,221 - 11607 mRNA_3239 0.50 -0.7
189,348 + 11607 mRNA_3239 0.60 +0.4
189,385 - 11607 mRNA_3239 0.63 -0.5
189,537 - 11607 mRNA_3239 0.74 -0.4
189,663 - 11607 mRNA_3239 0.84 +0.0
189,800 + +0.5
189,862 - -0.5
189,953 - +0.8
190,061 + +0.5
190,075 + -0.3
190,081 + +0.9
190,236 - -0.4
190,244 + +0.3
190,248 - +1.8
190,265 + -1.2
190,433 - -1.0
190,548 - +1.6
190,596 + +0.4

Or see this region's nucleotide sequence