Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3249

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11616 and 11617 are separated by 476 nucleotides11617 and 11618 are separated by 155 nucleotides mRNA_3248: 11616 - Hypothetical Protein, at 210,155 to 211,275 11616 mRNA_3249: 11617 - Hypothetical Protein, at 211,752 to 212,300 11617 mRNA_3250: 11618 - K00415 QCR2, UQCRC2 ubiquinol-cytochrome c reductase core subunit 2, at 212,456 to 214,047 11618

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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210,768 - 11616 mRNA_3248 0.55 +1.5
210,898 + 11616 mRNA_3248 0.66 +1.3
210,970 + 11616 mRNA_3248 0.73 -1.2
211,043 - 11616 mRNA_3248 0.79 -0.3
211,226 + -0.4
211,241 - +0.1
211,386 - -0.9
211,439 - -0.5
211,621 - -0.1
211,789 - -0.1
211,836 + 11617 mRNA_3249 0.15 +0.2
211,920 - 11617 mRNA_3249 0.31 -0.0
211,925 - 11617 mRNA_3249 0.32 +0.1
211,930 - 11617 mRNA_3249 0.32 -0.9
211,962 + 11617 mRNA_3249 0.38 +0.6
212,064 + 11617 mRNA_3249 0.57 +1.2
212,120 + 11617 mRNA_3249 0.67 +0.2
212,233 - 11617 mRNA_3249 0.88 -1.6
212,242 - 11617 mRNA_3249 0.89 -0.1
212,261 - -0.5
212,263 - -1.3
212,267 + -0.2
212,380 + -0.4
212,387 + +1.0
212,387 + +0.3
212,390 - +1.3
212,438 + -1.2
212,441 + -1.4

Or see this region's nucleotide sequence