Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3277

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11644 and 11645 are separated by 724 nucleotides11645 and 11646 are separated by 244 nucleotides mRNA_3276: 11644 - BLAST Nuclease PA3 [Grifola frondosa], at 268,106 to 268,881 11644 mRNA_3277: 11645 - K14835 NOP2 ribosomal RNA methyltransferase Nop2, at 269,606 to 272,171 11645 mRNA_3278: 11646 - K14152 HIS4 phosphoribosyl-ATP pyrophosphohydrolase / phosphoribosyl-AMP cyclohydrolase / histidinol dehydrogenase, at 272,416 to 277,579 11646

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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268,624 - 11644 mRNA_3276 0.67 +0.3
268,798 + 11644 mRNA_3276 0.89 -0.4
268,884 - +0.3
268,899 + +0.5
268,908 + +1.4
268,916 - +0.4
268,917 - -0.5
268,918 + +0.5
268,938 + -0.1
268,953 - -0.2
268,953 + -0.9
268,957 + +0.1
268,963 - +0.8
269,083 - -0.0
269,096 + -0.4
269,098 + -0.2
269,099 - -0.0
269,101 - -0.9
269,103 - +0.4
269,105 - -0.1
269,106 - +0.2
269,112 + -0.0
269,116 - +0.8
269,118 + +0.2
269,130 + +0.0
269,238 + +1.0
269,240 + -0.6
269,378 + +0.2
269,393 - -0.9
269,401 + -0.2
269,409 - +0.1
269,409 + +0.3
269,411 - -0.4
269,518 - -0.3

Or see this region's nucleotide sequence