Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3336

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11702 and 11703 are separated by 114 nucleotides11703 and 11704 are separated by 139 nucleotides11704 and 11705 are separated by 307 nucleotides mRNA_3334: 11702 - K03936 NDUFS3 NADH dehydrogenase (ubiquinone) Fe-S protein 3, at 413,797 to 414,963 11702 mRNA_3335: 11703 - Hypothetical Protein, at 415,078 to 415,551 11703 mRNA_3336: 11704 - K07827 KRAS, KRAS2 GTPase KRas, at 415,691 to 416,703 11704 mRNA_3337: 11705 - KOG3336 Predicted member of the intramitochondrial sorting protein family, at 417,011 to 417,925 11705

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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414,939 + -1.1
414,983 + -1.2
415,091 - +2.9
415,260 - 11703 mRNA_3335 0.38 -0.1
415,329 - 11703 mRNA_3335 0.53 -0.7
415,362 - 11703 mRNA_3335 0.60 -0.9
415,387 + 11703 mRNA_3335 0.65 +0.1
415,392 + 11703 mRNA_3335 0.66 -0.2
415,523 + +0.1
415,530 - -0.3
415,537 + -1.5
415,682 - +0.5
415,684 + +0.4
415,688 - -0.9
415,698 + -0.5
415,700 - +0.6
415,843 - 11704 mRNA_3336 0.15 -0.5
415,849 + 11704 mRNA_3336 0.16 -0.3
415,931 - 11704 mRNA_3336 0.24 -0.3
415,972 - 11704 mRNA_3336 0.28 +0.0
415,979 - 11704 mRNA_3336 0.28 -0.6
416,076 - 11704 mRNA_3336 0.38 -1.4
416,076 - 11704 mRNA_3336 0.38 -1.4
416,118 + 11704 mRNA_3336 0.42 +0.6
416,310 - 11704 mRNA_3336 0.61 -0.9
416,486 + 11704 mRNA_3336 0.78 -1.5
416,522 + 11704 mRNA_3336 0.82 +1.0
417,015 - -0.3

Or see this region's nucleotide sequence