Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3395

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11762 and 11763 are separated by 157 nucleotides11763 and 11764 are separated by 562 nucleotides mRNA_3394: 11762 - HMMPfam-UreF-PF01730, at 574,156 to 575,292 11762 mRNA_3395: 11763 - K07566 tsaC, rimN, SUA5 L-threonylcarbamoyladenylate synthase, at 575,450 to 577,006 11763 mRNA_3396: 11764 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 577,569 to 578,953 11764

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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574,462 - 11762 mRNA_3394 0.27 -0.5
574,555 + 11762 mRNA_3394 0.35 -0.5
574,665 + 11762 mRNA_3394 0.45 +0.5
574,723 - 11762 mRNA_3394 0.50 +0.2
574,792 - 11762 mRNA_3394 0.56 +0.4
574,823 + 11762 mRNA_3394 0.59 -0.3
574,826 - 11762 mRNA_3394 0.59 -0.6
574,827 - 11762 mRNA_3394 0.59 -1.2
574,832 + 11762 mRNA_3394 0.59 -0.8
574,898 - 11762 mRNA_3394 0.65 -0.2
574,928 + 11762 mRNA_3394 0.68 +0.3
574,942 + 11762 mRNA_3394 0.69 +1.5
575,093 - 11762 mRNA_3394 0.82 +0.4
575,094 + 11762 mRNA_3394 0.82 +0.1
575,388 + +0.3
577,149 + -0.4
577,284 - +0.5
577,292 + -0.5
577,293 + +0.1
577,423 - +1.2
577,714 - 11764 mRNA_3396 0.10 -0.1
577,715 + 11764 mRNA_3396 0.11 +0.3
577,916 + 11764 mRNA_3396 0.25 -0.3
577,977 + 11764 mRNA_3396 0.29 +0.2
577,993 - 11764 mRNA_3396 0.31 +0.1

Or see this region's nucleotide sequence