Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3420

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11787 and 11788 are separated by 390 nucleotides11788 and 11789 are separated by 443 nucleotides mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50,010 to 53,314 11787 mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53,705 to 57,912 11788 mRNA_3421: 11789 - K14297 NUP98, ADAR2, NUP116 nuclear pore complex protein Nup98-Nup96, at 58,356 to 61,690 11789

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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52,981 - 11787 mRNA_3419 0.90 -0.6
53,417 - +0.4
53,602 - -0.6
53,604 - +0.2
53,609 + -0.7
53,615 - -1.0
53,615 - +0.1
53,616 - -0.2
53,624 + +0.2
54,355 - 11788 mRNA_3420 0.15 +0.1
54,644 - 11788 mRNA_3420 0.22 +1.1
54,766 + 11788 mRNA_3420 0.25 -0.5
54,778 - 11788 mRNA_3420 0.25 +0.7
55,615 - 11788 mRNA_3420 0.45 +0.7
55,807 + 11788 mRNA_3420 0.50 +0.9
56,111 + 11788 mRNA_3420 0.57 -0.3
56,114 + 11788 mRNA_3420 0.57 -1.2
56,247 - 11788 mRNA_3420 0.60 +0.4
57,408 + 11788 mRNA_3420 0.88 +0.1
57,575 - +0.1
57,711 - -0.0
57,717 - -1.2
57,829 - -0.1
57,865 - -2.4
57,979 + -1.1
57,997 + -0.4
58,017 + +0.2
58,020 - +0.0
58,023 + +0.2
58,028 + -0.5
58,028 - -1.2
58,141 - -0.9

Or see this region's nucleotide sequence