Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3486

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11853 and 11854 are separated by 331 nucleotides11854 and 11855 are separated by 571 nucleotides mRNA_3485: 11853 - HMMPfam-Neugrin-PF06413, at 216,830 to 218,374 11853 mRNA_3486: 11854 - K04563 CDC28, CDC2 cyclin-dependent kinase, at 218,706 to 220,470 11854 mRNA_3487: 11855 - Hypothetical Protein, at 221,042 to 223,920 11855

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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218,472 + +0.4
218,479 + +1.2
218,481 + +0.4
218,485 + -0.5
218,590 - +0.2
218,624 + -2.2
220,649 - +0.1
220,734 - -0.1
220,826 + -0.2
221,104 - -0.9
221,132 - +0.3
221,221 - +0.0
221,458 + 11855 mRNA_3487 0.14 +0.2

Or see this region's nucleotide sequence