Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3487

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11854 and 11855 are separated by 571 nucleotides11855 and 11856 are separated by 484 nucleotides mRNA_3486: 11854 - K04563 CDC28, CDC2 cyclin-dependent kinase, at 218,706 to 220,470 11854 mRNA_3487: 11855 - Hypothetical Protein, at 221,042 to 223,920 11855 mRNA_3488: 11856 - Hypothetical Protein, at 224,405 to 225,242 11856

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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220,649 - +0.1
220,734 - -0.1
220,826 + -0.2
221,104 - -0.9
221,132 - +0.3
221,221 - +0.0
221,458 + 11855 mRNA_3487 0.14 +0.2
221,495 + 11855 mRNA_3487 0.16 +0.0
221,640 - 11855 mRNA_3487 0.21 -2.3
221,939 + 11855 mRNA_3487 0.31 +0.6
222,057 - 11855 mRNA_3487 0.35 -0.7
222,378 + 11855 mRNA_3487 0.46 -0.6
222,385 - 11855 mRNA_3487 0.47 +0.9
222,420 + 11855 mRNA_3487 0.48 -0.2
222,488 - 11855 mRNA_3487 0.50 +0.6
222,548 + 11855 mRNA_3487 0.52 +0.9
222,734 + 11855 mRNA_3487 0.59 -1.8
222,826 - 11855 mRNA_3487 0.62 -0.1
222,960 + 11855 mRNA_3487 0.67 -0.8
223,425 - 11855 mRNA_3487 0.83 +0.4
223,559 - 11855 mRNA_3487 0.87 -0.1
223,712 + -0.5
224,189 + -0.1
224,585 - 11856 mRNA_3488 0.21 +1.2
224,590 - 11856 mRNA_3488 0.22 -0.0
224,598 + 11856 mRNA_3488 0.23 -0.4
224,654 + 11856 mRNA_3488 0.30 -0.9
224,774 + 11856 mRNA_3488 0.44 +0.3
224,869 - 11856 mRNA_3488 0.55 +0.0

Or see this region's nucleotide sequence