Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3512

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11879 and 11880 are separated by 43 nucleotides mRNA_3511: 11879 - K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein, at 270,571 to 274,030 11879 mRNA_3512: 11880 - K10873 RAD52 DNA repair and recombination protein RAD52, at 274,074 to 276,108 11880

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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273,945 + +0.3
274,402 + 11880 mRNA_3512 0.16 -1.5
274,438 + 11880 mRNA_3512 0.18 -0.2
274,546 - 11880 mRNA_3512 0.23 +0.4
274,660 + 11880 mRNA_3512 0.29 -0.8
274,660 - 11880 mRNA_3512 0.29 -1.4
274,697 + 11880 mRNA_3512 0.31 -0.0
274,699 - 11880 mRNA_3512 0.31 +0.6
274,706 - 11880 mRNA_3512 0.31 -0.2
274,827 - 11880 mRNA_3512 0.37 +0.4
274,827 - 11880 mRNA_3512 0.37 +0.7
274,854 + 11880 mRNA_3512 0.38 +0.5
275,724 - 11880 mRNA_3512 0.81 -0.3
276,000 - -0.3
276,456 + -1.0
276,521 - +0.3
276,585 - +0.7
276,609 + +2.1
276,862 - +0.5

Or see this region's nucleotide sequence