Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3516

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11883 and 11884 are separated by 236 nucleotides11884 and 11885 are separated by 202 nucleotides mRNA_3515: 11883 - K01277 DPP3 dipeptidyl-peptidase III, at 285,817 to 288,339 11883 mRNA_3516: 11884 - K01466 allB allantoinase, at 288,576 to 290,377 11884 mRNA_3517: 11885 - K06677 YCS4, CNAP1, CAPD2 condensin complex subunit 1, at 290,580 to 295,754 11885

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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287,930 - 11883 mRNA_3515 0.84 +0.3
288,654 - +0.1
288,696 + +0.1
288,739 - -2.0
288,825 - 11884 mRNA_3516 0.14 -0.9
289,121 - 11884 mRNA_3516 0.30 +1.0
289,324 - 11884 mRNA_3516 0.42 +1.6
290,066 + 11884 mRNA_3516 0.83 +0.6
290,640 + +0.5

Or see this region's nucleotide sequence