Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3576

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11943 and 11944 are separated by 468 nucleotides11944 and 11945 are separated by 997 nucleotides mRNA_3575: 11943 - Hypothetical Protein, at 86,235 to 86,923 11943 mRNA_3576: 11944 - Hypothetical Protein, at 87,392 to 87,994 11944 mRNA_3577: 11945 - K04567 KARS, lysS lysyl-tRNA synthetase, class II, at 88,992 to 92,589 11945

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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86,396 - 11943 mRNA_3575 0.23 -1.4
86,400 + 11943 mRNA_3575 0.24 -0.4
86,695 + 11943 mRNA_3575 0.67 +0.3
86,821 + 11943 mRNA_3575 0.85 -1.4
87,173 - -1.1
87,284 + -0.8
87,296 - -0.5
87,427 + -0.3
87,855 - 11944 mRNA_3576 0.77 +0.3
88,030 - -1.2
88,142 - -1.5
88,436 - -0.0
88,741 - -0.4
88,894 - -0.6
88,898 - +0.3

Or see this region's nucleotide sequence