Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3587

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11954 and 11955 are separated by 181 nucleotides11955 and 11956 are separated by 244 nucleotides mRNA_3586: 11954 - HMMPfam-Membrane fusion protein Use1-PF09753, at 110,146 to 111,411 11954 mRNA_3587: 11955 - K12836 U2AF1 splicing factor U2AF 35 kDa subunit, at 111,593 to 112,967 11955 mRNA_3588: 11956 - KOG0254 Predicted transporter (major facilitator superfamily), at 113,212 to 115,744 11956

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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111,489 + +0.4
111,502 + +0.2
113,196 - -1.8
113,198 + -0.6
113,676 - 11956 mRNA_3588 0.18 +0.2

Or see this region's nucleotide sequence