Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3595

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11962 and 11963 are separated by 398 nucleotides11963 and 11964 are separated by 118 nucleotides mRNA_3594: 11962 - K01555 FAH, fahA fumarylacetoacetase, at 127,609 to 129,068 11962 mRNA_3595: 11963 - K09838 ZEP, ABA1 zeaxanthin epoxidase, at 129,467 to 131,137 11963 mRNA_3596: 11964 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 131,256 to 132,687 11964

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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128,548 - 11962 mRNA_3594 0.64 +0.5
128,693 + 11962 mRNA_3594 0.74 -0.0
129,007 + +0.4
129,304 - +0.2
129,856 - 11963 mRNA_3595 0.23 +0.6
130,317 - 11963 mRNA_3595 0.51 +1.2
130,326 + 11963 mRNA_3595 0.51 +0.5
130,453 - 11963 mRNA_3595 0.59 -1.7
130,462 + 11963 mRNA_3595 0.60 -0.4
131,008 + -0.4
131,062 + -0.3
131,074 + +0.2
131,076 + +0.1
131,198 + +0.1
131,200 + +0.4
131,254 - +0.2
131,268 - -0.3
131,268 - +0.0
131,276 - -0.3
131,276 - +1.3
131,277 + -0.8
131,278 - +0.2
131,278 + -0.5
131,279 + +0.3
131,285 + +1.1
131,287 + -0.8
131,302 - -0.6
131,302 - +0.5
131,303 - -1.6
131,304 + -0.3
131,308 + +0.1
131,310 + +2.1
131,312 + -0.4
131,318 - +1.5
131,320 - +0.0
131,326 + -0.6
131,326 + -0.5
131,337 + +0.4
131,338 + -0.3
131,339 + +1.5
131,340 - +0.5
131,352 - +0.0
131,354 - -0.8
131,367 - -0.6
131,418 - 11964 mRNA_3596 0.11 +0.1
131,425 - 11964 mRNA_3596 0.12 +1.2
131,449 - 11964 mRNA_3596 0.13 +0.5
131,467 - 11964 mRNA_3596 0.15 -0.4
131,492 + 11964 mRNA_3596 0.16 -0.1
131,607 + 11964 mRNA_3596 0.25 -1.6
131,608 + 11964 mRNA_3596 0.25 +0.1
131,654 + 11964 mRNA_3596 0.28 -0.7
131,877 + 11964 mRNA_3596 0.43 +0.0
131,921 - 11964 mRNA_3596 0.46 +0.9

Or see this region's nucleotide sequence