Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3598

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11966 and 11967 are separated by 217 nucleotides mRNA_3598: 11966 - KOG2652 RNA polymerase II transcription initiation factor TFIIA, large chain, at 137,259 to 138,295 11966 mRNA_3599: 11967 - K02134 ATPeF1D, ATP5D, ATP16 F-type H+-transporting ATPase subunit delta, at 138,513 to 139,861 11967

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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136,339 - +0.6
136,776 - -0.1
136,802 - -0.1
136,938 - +1.1
137,107 + -0.2
138,385 - -0.5
138,388 + -0.2
138,415 + -0.7
138,441 - +0.5
138,445 + +0.5
138,446 + -1.1
138,449 + -1.3
138,450 - -0.8
138,451 + -1.4
138,454 - +0.2
138,457 - -0.3
138,465 - -0.9
138,465 + -1.8
138,471 + -0.8
138,473 + -0.1
138,476 + -2.3
138,477 + -2.1

Or see this region's nucleotide sequence