Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3606

Experiment: YNB Oleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11973 and 11974 are separated by 138 nucleotides11974 and 11975 are separated by 115 nucleotides mRNA_3605: 11973 - K01872 AARS, alaS alanyl-tRNA synthetase, at 154,792 to 158,003 11973 mRNA_3606: 11974 - HMMPfam-Tho complex subunit 7-PF05615, at 158,142 to 159,312 11974 mRNA_3607: 11975 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 159,428 to 160,353 11975

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Oleic Acid
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158,041 - -1.0
158,141 + -1.4
158,176 - +1.0
158,573 - 11974 mRNA_3606 0.37 -2.5
158,579 - 11974 mRNA_3606 0.37 -1.4
158,919 - 11974 mRNA_3606 0.66 -0.9
159,068 - 11974 mRNA_3606 0.79 -0.6
159,341 - -0.2
159,349 - -0.7
159,350 + -0.9
159,385 + -0.1
159,619 - 11975 mRNA_3607 0.21 +1.2
159,638 - 11975 mRNA_3607 0.23 -0.2
159,660 - 11975 mRNA_3607 0.25 -0.4
159,663 - 11975 mRNA_3607 0.25 -0.1
159,930 - 11975 mRNA_3607 0.54 +0.3
159,960 + 11975 mRNA_3607 0.57 -0.2
160,202 + 11975 mRNA_3607 0.84 -0.2
160,222 + 11975 mRNA_3607 0.86 -1.5

Or see this region's nucleotide sequence